LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g0290	ATGTCTATTATCGAGACCCCGACCGTCGAATGCGTTCATCAGCGCGGCGGAGGTAGCGCCGATCACCATCGTGCTTCCACTAAACGTAAATTTGATGATTTCGCAACTGCCTTCAACGATGACGGTGAAAATTTTGTCGATTTTTGTGATTTATGTGACTTGGTGTCGGTGAGAATGAGGAAAGACGAACCGAAAGCCGTAAATTCTTGCAATTCTGAAACTTTTAACGGGTCTGTCCCAGATGTTGTTGATACTAGGATATCGGGCACTGCCCCGTATGCTTGTTCATCGCGGTCCGAGTCCACTCGGCCGTGGTCGAAACTGCAGTTTTTCATTCGATCGATGTCAGAAGGAAAAACTATGGTACTGGATGCTTGTCCACAAGATACTGTAAGATCGATTCATGAACGTATCCAAGCAATTACGGGCATTCCGCTGTTTGAGCAGAGATTGATATATATGGGTAAACAGCTCCAGTGGGAACAGACTCTGGTCGAGTGTGCAATTGAGAGAGATTGTCATCTTCAATTGGTTGGGCGCATGCGCAGCACAGAACATCCTCAAGCTTGGCAGATATTTTTGTCTTCATCTGCCCCAGTTGTGCTTGTTATGCTCTATATGTCACCCTATGTAGGTAACAAAGAATGTGCTGATTGTTCAATTAGGCATTTTATGAGTTCCTGTCGCAGCACCTTGTCTAAGTCATTGCATACTAAGTGCGCGAGTGTAGTGTTGGAGTTTTGCAAATTACTCAGAAGGGCGGGTCCTGAGGATCCTTTGTATCTCTCTTGTCGGAGCACCTTTGGGTCTTTATTGGAGACTGCTAATATTTCCCATGTTTCAGTGAGCGACAAGGAATTAATTATAATTAAAGATATTCTCCCTTTTGTTCGAGAAATTGCAAAGAGATTGCTGAGGGCTTTGGATATGAGTATGGAATCCCCCACTAGTGTAGGGCCATTGTTGAGTGATGTTCGGGATTTTACTGCATTCTTACTCCCTCTAAGGACTAGAATCAGCAAGCAACAAGCTTTCAAGAGTCTATATTCTTCCAAGTCTGATGAAAAACTAAATAAGCTCCTGTTACTTGTGGAAGAGGATGATATTCATCTTATATTTAGTGAATTATTGCAAAAAATGGATCAGTGCCTTAAAAAAATGCAGGAATTTGTGGCTGCCAAGGAACGAGAGGAGGGAGATAATCTTCCGGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACCTTTCTCAGCTCTATGAAGGAGCTGAAGAAGAATTTTGGTCAGTTTTGAGACATCAAAGAAGTATGCTGGTTCTACTTATCACCCAGTATGCAAAGCGAACTGATGATCATCAGTGGATTCTGGAGCACAAGCATGTAACGAATTTTGAATCTAGGAGGCATTTAGTGATGCTGATGTTCCCCGATGTAAAAGAAGACTATGAAGAATTGCATGAGATGCTCATTGACCGGTCTCAGCTGTTGGCAGAATCATTTGAATACATAGCACGGGCAGAGCCTGAATCTCTACATGCTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCCACAGGTCCAGGTGTACTGCGAGAGTGGTTTTTCTTGGTATGCCAAGCTTTATTTAATCCACAAAATGCTCTTTTTGTGGCGTGCCCAAATGACCAGAGGAGATTTCTTCCAAATCCTGCATCTAAGGTGCATCCTTTGCACCTTGATTACTTCACCTTCTCTGGTCGAGTTATCGCATTAGCTTTAATGCATAGGCTACAAGTGGGTATTGTTTTGGATCGTGTGTTTTTCATGCAATTGGCCGGAAACTATATTACTTTAGAAGATATACGGGATGCTGATCCATCTTTGTATCGTAGCTGCAAGAAAATATTGGAGATGGATGCAGATGTCATTGATTCAGATGCTTTAGGACTGACCTTTGTTAGAGAGGTTGAGGAATTGGGATCCAGGAAAGTGGTTGAGCTTTGCCCTGATGGGAAAAGCCTTGTTGTTAATAGCAAGAACAGGGAGAAGTATATTGATCTTCTTATACAGGATCGTTTTGTAACATCTATATCTGAGCAGGTGTCACATTTTGCTCAAGGTTTTGCTGATATTCTTTGCAACCCCAGACTCCAACAGTTCTTTTTTCGAAGTCTAGATCTTGAGGATCTCGATTGGATGCTGCATGGGAGTGAAAGTACCATTTCTGTTGAAGATTGGAAGGCACATACTGAGTACAATGGCTATAAAGAGACAGATCCACAAATAACTTGGTTCTGGGAGATTGTTGGGAAAATGTCAGCAGAGCAAAGGAAGGTTCTTCTGTTTTTTTGGACATCTCTGAAACATTTACCCGTGGAAGGTTTCAAAGGTTTGTCTTCTCGTCTCTACATTTACAACAACAAGGAACACAATGATCACCTTCCTTCATCGCACACTTGCTTCTTCCGGCTGTGTTTCCCTCCATATCCTTCTTTCTCTGTCATGCAAGATCGTCTTCGAATCATCACACAGGAACACATTGGCTGCAGCTTTGGTACTTGGTGA	2550	0.4255	MSIIETPTVECVHQRGGGSADHHRASTKRKFDDFATAFNDDGENFVDFCDLCDLVSVRMRKDEPKAVNSCNSETFNGSVPDVVDTRISGTAPYACSSRSESTRPWSKLQFFIRSMSEGKTMVLDACPQDTVRSIHERIQAITGIPLFEQRLIYMGKQLQWEQTLVECAIERDCHLQLVGRMRSTEHPQAWQIFLSSSAPVVLVMLYMSPYVGNKECADCSIRHFMSSCRSTLSKSLHTKCASVVLEFCKLLRRAGPEDPLYLSCRSTFGSLLETANISHVSVSDKELIIIKDILPFVREIAKRLLRALDMSMESPTSVGPLLSDVRDFTAFLLPLRTRISKQQAFKSLYSSKSDEKLNKLLLLVEEDDIHLIFSELLQKMDQCLKKMQEFVAAKEREEGDNLPAWSQYLSILKELYHLSQLYEGAEEEFWSVLRHQRSMLVLLITQYAKRTDDHQWILEHKHVTNFESRRHLVMLMFPDVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQALFNPQNALFVACPNDQRRFLPNPASKVHPLHLDYFTFSGRVIALALMHRLQVGIVLDRVFFMQLAGNYITLEDIRDADPSLYRSCKKILEMDADVIDSDALGLTFVREVEELGSRKVVELCPDGKSLVVNSKNREKYIDLLIQDRFVTSISEQVSHFAQGFADILCNPRLQQFFFRSLDLEDLDWMLHGSESTISVEDWKAHTEYNGYKETDPQITWFWEIVGKMSAEQRKVLLFFWTSLKHLPVEGFKGLSSRLYIYNNKEHNDHLPSSHTCFFRLCFPPYPSFSVMQDRLRIITQEHIGCSFGTW	849

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g0290	849	SUPERFAMILY	Hect, E3 ligase catalytic domain	484	836	IPR035983	GO:0004842
	Prci3g0290	849	ProSiteProfiles	Ubiquitin domain profile.	108	184	IPR000626	GO:0005515
	Prci3g0290	849	Gene3D	Hect, E3 ligase catalytic domain	733	848	-	-
	Prci3g0290	849	Gene3D	-	101	192	-	-
	Prci3g0290	849	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	609	691	-	-
	Prci3g0290	849	SUPERFAMILY	Ubiquitin-like	109	195	IPR029071	-
	Prci3g0290	849	CDD	HECTc	488	847	IPR000569	GO:0004842
	Prci3g0290	849	ProSiteProfiles	HECT domain profile.	509	849	IPR000569	GO:0004842
	Prci3g0290	849	SMART	ubq_7	108	180	IPR000626	GO:0005515
	Prci3g0290	849	Gene3D	Hect, E3 ligase catalytic domain	609	691	-	-
	Prci3g0290	849	FunFam	E3 ubiquitin-protein ligase UPL5	733	848	-	-
	Prci3g0290	849	SMART	hect_3	507	847	IPR000569	GO:0004842
	Prci3g0290	849	Pfam	HECT-domain (ubiquitin-transferase)	538	841	IPR000569	GO:0004842
	Prci3g0290	849	PRINTS	Ubiquitin signature	161	182	IPR019956	-
	Prci3g0290	849	PRINTS	Ubiquitin signature	119	139	IPR019956	-
	Prci3g0290	849	PRINTS	Ubiquitin signature	140	160	IPR019956	-
	Prci3g0290	849	Gene3D	Hect, E3 ligase catalytic domains	491	716	-	-
	Prci3g0290	849	Pfam	Ubiquitin family	111	182	IPR000626	GO:0005515
	Prci3g0290	849	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	109	847	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g0290	Prci-Chr3	3748493	3765505	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g0290	108	182	Cytoplasmic Ribosomal Protein Gene Family	AT3G62250	38.667	1.22e-10	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g0290	-		-	gmx:100789233	1181.39