LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g0288	ATGTCTATTATCGAGACCCCGACCGTCGAATGCGTTCATCAGCGCGGCGGAGGTAGCGCCGATCACCATCGTGCTTCCACTAAACGTAAATTTGATGATTTCGCAACTGCCTTCAACGATGACGGTGAAAATTTTGTCGATTTTTGTGATTTATGTGACTTGGTGTCGGTGAGAATGAGGAAAGACGAACCGAAAGCCGTAAATTCTTGCAATTCTGAAACTTTTAACGGGTCTGTCCCAGATGTTGTTGATACTAGGATATCGGGCACTGCCCCGTATGCTTGTTCATCGCGGTCCGAGTCCACTCGGCCGTGGTCGAAACTGCAGTTTTTCATTCGATCGATGTCAGAAGGAAAAACTATGGTACTGGATGCTTGTCCACAAGATACTGTAAGATCGATTCATGAACGTATCCAAGCAATTACGGGCATTCCGCTGTTTGAGCAGAGATTGATATATATGGGTAAACAGCTCCAGTGGGAACAGACTCTGGTCGAGTGTGCAATTGAGAGAGATTGTCATCTTCAATTGGTTGGGCGCATGCGCAGCACAGAACATCCTCAAGCTTGGCAGGTAATCAACGATATGGTTTCTCTAATTTGGCGTCTCTGCAGGGGTGAAGTGGAGCATGATGCCTCGAAAATTATCAAAGGCCTTATAACTGACTATTTAAAAATGACTCCTAGAATTGATAATGATTCAGCTTCTGGTTATTTCCAGATATTTTTGTCTTCATCTGCCCCAGTTGTGCTTGTTATGCTCTATATGTCACCCTATGTAGGTAACAAAGAATGTGCTGATTGTTCAATTAGGCATTTTATGAGTTCCTGTCGCAGCACCTTGTCTAAGTCATTGCATACTAAGTGCGCGAGTGTAGTGTTGGAGTTTTGCAAATTACTCAGAAGGGCGGGTCCTGAGGATCCTTTGTATCTCTCTTGTCGGAGCACCTTTGGGTCTTTATTGGAGACTGCTAATATTTCCCATGTTTCAGTGAGCGACAAGGAATTAATTATAATTAAAGATATTCTCCCTTTTGTTCGAGAAATTGCAAAGAGATTGCTGAGGGCTTTGGATATGAGTATGGAATCCCCCACTAGTGTAGGGCCATTGTTGAGTGATGTTCGGGATTTTACTGCATTCTTACTCCCTCTAAGGACTAGAATCAGCAAGCAACAAGCTTTCAAGAGTCTATATTCTTCCAAGTCTGATGAAAAACTAAATAAGCTCCTGTTACTTGTGGAAGAGGATGATATTCATCTTATATTTAGTGAATTATTGCAAAAAATGGATCAGTGCCTTAAAAAAATGCAGGAATTTGTGGCTGCCAAGGAACGAGAGGAGGGAGATAATCTTCCGGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACCTTTCTCAGCTCTATGAAGGAGCTGAAGAAGAATTTTGGTCAGTTTTGAGACATCAAAGAAGTATGCTGGTTCTACTTATCACCCAGTATGCAAAGCGAACTGATGATCATCAGTGGATTCTGGAGCACAAGCATGTAACGAATTTTGAATCTAGGAGGCATTTAGTGATGCTGATGTTCCCCGATGTAAAAGAAGACTATGAAGAATTGCATGAGATGCTCATTGACCGGTCTCAGCTGTTGGCAGAATCATTTGAATACATAGCACGGGCAGAGCCTGAATCTCTACATGCTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCCACAGGTCCAGGTGTACTGCGAGAGTGGTTTTTCTTGGTATGCCAAGCTTTATTTAATCCACAAAATGCTCTTTTTGTGGCGTGCCCAAATGACCAGAGGAGATTTCTTCCAAATCCTGCATCTAAGGTGCATCCTTTGCACCTTGATTACTTCACCTTCTCTGGTCGAGTTATCGCATTAGCTTTAATGCATAGGCTACAAGTGGGTATTGTTTTGGATCGTGTGTTTTTCATGCAATTGGCCGGAAACTATATTACTTTAGAAGATATACGGGATGCTGATCCATCTTTGTATCGTAGCTGCAAGAAAATATTGGAGATGGATGCAGATGTCATTGATTCAGATGCTTTAGGACTGACCTTTGTTAGAGAGGTTGAGGAATTGGGATCCAGGAAAGTGGTTGAGCTTTGCCCTGATGGGAAAAGCCTTGTTGTTAATAGCAAGAACAGGGAGAAGTATATTGATCTTCTTATACAGGATCGTTTTGTAACATCTATATCTGAGCAGGTGTCACATTTTGCTCAAGGTTTTGCTGATATTCTTTGCAACCCCAGACTCCAACAGTTCTTTTTTCGAAGTCTAGATCTTGAGGATCTCGATTGGATGCTGCATGGGAGTGAAAGTACCATTTCTGTTGAAGATTGGAAGGCACATACTGAGTACAATGGCTATAAAGAGACAGATCCACAAATAACTTGGTTCTGGGAGATTGTTGGGAAAATGTCAGCAGAGCAAAGGAAGGTTCTTCTGTTTTTTTGGACATCTCTGAAACATTTACCCGTGGAAGGTTTCAAAGGTTTGTCTTCTCGTCTCTACATTTACAACAACAAGGAACACAATGATCACCTTCCTTCATCGCACACTTGCTTCTTCCGGCTGTGTTTCCCTCCATATCCTTCTTTCTCTGTCATGCAAGATCGTCTTCGAATCATCACACAGGAACACATTGGCTGCAGCTTTGGTACTTGGTGA	2697	0.4231	MSIIETPTVECVHQRGGGSADHHRASTKRKFDDFATAFNDDGENFVDFCDLCDLVSVRMRKDEPKAVNSCNSETFNGSVPDVVDTRISGTAPYACSSRSESTRPWSKLQFFIRSMSEGKTMVLDACPQDTVRSIHERIQAITGIPLFEQRLIYMGKQLQWEQTLVECAIERDCHLQLVGRMRSTEHPQAWQVINDMVSLIWRLCRGEVEHDASKIIKGLITDYLKMTPRIDNDSASGYFQIFLSSSAPVVLVMLYMSPYVGNKECADCSIRHFMSSCRSTLSKSLHTKCASVVLEFCKLLRRAGPEDPLYLSCRSTFGSLLETANISHVSVSDKELIIIKDILPFVREIAKRLLRALDMSMESPTSVGPLLSDVRDFTAFLLPLRTRISKQQAFKSLYSSKSDEKLNKLLLLVEEDDIHLIFSELLQKMDQCLKKMQEFVAAKEREEGDNLPAWSQYLSILKELYHLSQLYEGAEEEFWSVLRHQRSMLVLLITQYAKRTDDHQWILEHKHVTNFESRRHLVMLMFPDVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQALFNPQNALFVACPNDQRRFLPNPASKVHPLHLDYFTFSGRVIALALMHRLQVGIVLDRVFFMQLAGNYITLEDIRDADPSLYRSCKKILEMDADVIDSDALGLTFVREVEELGSRKVVELCPDGKSLVVNSKNREKYIDLLIQDRFVTSISEQVSHFAQGFADILCNPRLQQFFFRSLDLEDLDWMLHGSESTISVEDWKAHTEYNGYKETDPQITWFWEIVGKMSAEQRKVLLFFWTSLKHLPVEGFKGLSSRLYIYNNKEHNDHLPSSHTCFFRLCFPPYPSFSVMQDRLRIITQEHIGCSFGTW	898

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g0288	898	SUPERFAMILY	Hect, E3 ligase catalytic domain	533	885	IPR035983	GO:0004842
	Prci3g0288	898	ProSiteProfiles	Ubiquitin domain profile.	108	184	IPR000626	GO:0005515
	Prci3g0288	898	Gene3D	-	102	196	-	-
	Prci3g0288	898	Pfam	Ubiquitin family	111	182	IPR000626	GO:0005515
	Prci3g0288	898	PRINTS	Ubiquitin signature	161	182	IPR019956	-
	Prci3g0288	898	PRINTS	Ubiquitin signature	119	139	IPR019956	-
	Prci3g0288	898	PRINTS	Ubiquitin signature	140	160	IPR019956	-
	Prci3g0288	898	Pfam	HECT-domain (ubiquitin-transferase)	587	890	IPR000569	GO:0004842
	Prci3g0288	898	ProSiteProfiles	HECT domain profile.	558	898	IPR000569	GO:0004842
	Prci3g0288	898	FunFam	E3 ubiquitin-protein ligase UPL5	782	897	-	-
	Prci3g0288	898	Gene3D	Hect, E3 ligase catalytic domain	782	897	-	-
	Prci3g0288	898	SUPERFAMILY	Ubiquitin-like	109	196	IPR029071	-
	Prci3g0288	898	Gene3D	Hect, E3 ligase catalytic domains	540	765	-	-
	Prci3g0288	898	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	109	896	-	-
	Prci3g0288	898	SMART	ubq_7	108	180	IPR000626	GO:0005515
	Prci3g0288	898	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	658	740	-	-
	Prci3g0288	898	SMART	hect_3	556	896	IPR000569	GO:0004842
	Prci3g0288	898	Gene3D	Hect, E3 ligase catalytic domain	658	740	-	-
	Prci3g0288	898	CDD	HECTc	537	896	IPR000569	GO:0004842

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g0288	Prci-Chr3	3748485	3765505	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g0288	108	182	Cytoplasmic Ribosomal Protein Gene Family	AT3G62250	38.667	1.29e-10	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g0288	-		-	gmx:100789233	1285.01