Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0254 ATGGAAGAATCACCGAAGGTGGAAGAGGGAGAAGAGAGGCCTTTGCGCATTGAAAACAACGATGAAGATGAGAAGGTTGCGTTATCGGTAGGCATGAATCGGAAGGAGAAGAGGAAGGCGATCAAGAAATTGAAGCGGAAGCAAATGAGGATGGAGATAGCAGCGAGGGAGCGCGAGGAAGAGGAGGCTCGGCTTAACGATCCCGAGGAGCAGAAAAGAGCACTACAGATGGAGCAGGAAGAGGCCGCGAGGATTGAGAGGGAAAGGAAGCTGTTTGAGGAAAGAGAGAGGGCCTGGATCGAGGCTATGGAGAAGAAGATGAAGGAGGCGGCGGAAGAAGAGCAGAGGAAGCTTCTCGAAGACACTCAGAAGCAACAGCAAGACAAGGAGACTGAATTGGATGAGGATGATGAATGGGAATATGTGGAGGAAGGGCCCGCTGAAATTATTTGGCAAGGAAATGAGATCATTTTTAAAAAGAAAAAAGTGAGGATTCCCAAGAAGGATTCGCTCCACCAAATTAAAAGGGAGGATGCCGATAGACCTACATCAAACCCTCTACCTCCAGAATCTGAAGCTTTTGCTGATTACACGAATTCATCAGCAGTTTCTGCACAGCAAGTTCTTGAGAGTGTTGCACAACAAGTGCCAAATTTTGGAACTGAACAGGATAAAGCTCACTGTCCCTTTCATTTAAAAACTGGAGCATGTCGATTTGGTCAACGCTGTAGCAGAGTCCATTTTTACCCTGATAAATCAAACACACTTCTTATTAAAAACATGTATACTGGTCCTGGCCTTGTTTGGGAGCAAGATGAGGGGCTTGAGTATACAGATGAAGAGGTGGAACGTAGTTTTGAAGAATTTTATGAGGATGTTCACACAGAGTTCCTGAAGTTTGGAGAAATTGTGAACTTTAAGGTGTGTAAAAATGGCTCCTTTCACTTGCGAGGGAACGTCTATGTGCATTATAAATCAATGGATTCTGCTGTCCTTGCATATAACTCAATCAGTAGTCGTTACTTTGCTGGAAAACAGATAAGGTGTGAATTTGTAAATGTGACTAGATGGAAGGTTGCAATATGTGGGGAGTATATGAAGTCAGGGTTCAAGGTGCAGTTATGGTCATGTCAAACTTGTTCTCACGGATCAGCTTGCAATTTTATCCACTGTTTTCGTAATCCTGGAGGAGATTATGCATGGGCTGACTCTGACAAACCACCCCCAAAGTATTGGGTGAAAAAGATGGCAGCTTTATTTGGTTATTCTGATGAACATGAGAAATTGATGGAGCAAGATGCTTTGAGTGCACTGAAGAACTCAAGCAAGAAACAAAAAGCAGATTCAGATAGGTACCGTTCAAGAAGATCAAGGGAGATTGGTGAGTTCAATAACAGTGGTTCAGGTAGAAGAAGAAAACATAGGAACGAACGAAATCAGAGCAGAACTCCCAATGAGGAAATATATGAACAAAATATCAACTTGAAAGACTACCATAACGGGAAAGGTGGAACTTCTGATTCTGACTCTGATAGAGAATGGTCAGATAAGGAAAAACGCCATAAACACCATAAACGCCATAGAAGAAGCTCAGTTAATAGGAACAAGGATGAGGAGAGGAGCCATGAAGGGTATCATGATGTGATGCATGGGGACAGTAAAAACCAGCATCAACACCATAGAAAACGCTCAACTAACAGGAACGAGGGTGATGAGAGAAGAAGCCATGAAGGGTATTCTGGTGAAGATTCAGATGCGACACCTAGGGACAGAAAACACCATCAACACCGTAGAAATTGCTCAATTACTAGGAACAAGGGCGATGAGAGGAGAAGCGATGAAGGGTATTCTGATGTGGATTCAGATGCGGAACCTGGGGACAGAAAAAAACACTGTCAGCACCATAGAAAATGCGCAACTAATCGTAATGAGGGTGATGAGAGAAGAAACCGTGAGGGGTATTCTGATGTTGATTCAGATGCTGTACCTGAGAACTGGAAAAAACAGCATAGTAGTGAAAGAAGGAGCTCAAGAAAAATGAATAGAAACAATGATGAGGCTGGACGTGGGGATTGGTCAGATAGGAATAGAGATAGGAAATGGCATAGCAAAAGCAGAAGCTCTAGACATAGGAGCAGGGACTACAGATATGCAACTAGTGATACTGAATCTGACGCTTGTTTATTTGATGGAGATGGAGACACACAAACTCAACGTCATTCTTCTAGGAAAAGCTCCAAACACAGGAGATCTGGTTCTCAGGATGATTATGAAGATTATGAACACAGAAATGAAGTCAACAGAGACTGGTCAATGGAGGACAGACAAGAACATCACCATGAAAAGAGGAAGAGTTAA 2358 0.4309 MEESPKVEEGEERPLRIENNDEDEKVALSVGMNRKEKRKAIKKLKRKQMRMEIAAREREEEEARLNDPEEQKRALQMEQEEAARIERERKLFEERERAWIEAMEKKMKEAAEEEQRKLLEDTQKQQQDKETELDEDDEWEYVEEGPAEIIWQGNEIIFKKKKVRIPKKDSLHQIKREDADRPTSNPLPPESEAFADYTNSSAVSAQQVLESVAQQVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPDKSNTLLIKNMYTGPGLVWEQDEGLEYTDEEVERSFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVHYKSMDSAVLAYNSISSRYFAGKQIRCEFVNVTRWKVAICGEYMKSGFKVQLWSCQTCSHGSACNFIHCFRNPGGDYAWADSDKPPPKYWVKKMAALFGYSDEHEKLMEQDALSALKNSSKKQKADSDRYRSRRSREIGEFNNSGSGRRRKHRNERNQSRTPNEEIYEQNINLKDYHNGKGGTSDSDSDREWSDKEKRHKHHKRHRRSSVNRNKDEERSHEGYHDVMHGDSKNQHQHHRKRSTNRNEGDERRSHEGYSGEDSDATPRDRKHHQHRRNCSITRNKGDERRSDEGYSDVDSDAEPGDRKKHCQHHRKCATNRNEGDERRNREGYSDVDSDAVPENWKKQHSSERRSSRKMNRNNDEAGRGDWSDRNRDRKWHSKSRSSRHRSRDYRYATSDTESDACLFDGDGDTQTQRHSSRKSSKHRRSGSQDDYEDYEHRNEVNRDWSMEDRQEHHHEKRKS 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0254 785 Coils Coil 100 132 - -
Prci3g0254 785 ProSiteProfiles Zinc finger C3H1-type profile. 356 393 IPR000571 GO:0046872
Prci3g0254 785 MobiDBLite consensus disorder prediction 107 137 - -
Prci3g0254 785 MobiDBLite consensus disorder prediction 564 590 - -
Prci3g0254 785 SMART c3hfinal6 223 249 IPR000571 GO:0046872
Prci3g0254 785 SMART c3hfinal6 356 392 IPR000571 GO:0046872
Prci3g0254 785 Gene3D - 253 352 IPR012677 -
Prci3g0254 785 MobiDBLite consensus disorder prediction 532 554 - -
Prci3g0254 785 MobiDBLite consensus disorder prediction 638 701 - -
Prci3g0254 785 FunFam Zinc finger CCCH domain-containing protein 5 255 352 - -
Prci3g0254 785 MobiDBLite consensus disorder prediction 601 629 - -
Prci3g0254 785 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 208 589 IPR009145 GO:0000398|GO:0003723|GO:0089701
Prci3g0254 785 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Prci3g0254 785 MobiDBLite consensus disorder prediction 107 130 - -
Prci3g0254 785 MobiDBLite consensus disorder prediction 436 785 - -
Prci3g0254 785 MobiDBLite consensus disorder prediction 1 22 - -
Prci3g0254 785 MobiDBLite consensus disorder prediction 55 80 - -
Prci3g0254 785 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 247 IPR000571 GO:0046872
Prci3g0254 785 MobiDBLite consensus disorder prediction 748 785 - -
Prci3g0254 785 MobiDBLite consensus disorder prediction 172 191 - -
Prci3g0254 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 354 IPR000504 GO:0003723
Prci3g0254 785 Coils Coil 34 95 - -
Prci3g0254 785 MobiDBLite consensus disorder prediction 502 518 - -
Prci3g0254 785 SUPERFAMILY RNA-binding domain, RBD 286 355 IPR035979 GO:0003676
Prci3g0254 785 PRINTS U2 auxiliary factor small subunit signature 311 333 IPR009145 GO:0000398|GO:0003723|GO:0089701
Prci3g0254 785 PRINTS U2 auxiliary factor small subunit signature 247 267 IPR009145 GO:0000398|GO:0003723|GO:0089701
Prci3g0254 785 PRINTS U2 auxiliary factor small subunit signature 338 362 IPR009145 GO:0000398|GO:0003723|GO:0089701
Prci3g0254 785 PRINTS U2 auxiliary factor small subunit signature 283 298 IPR009145 GO:0000398|GO:0003723|GO:0089701
Prci3g0254 785 PRINTS U2 auxiliary factor small subunit signature 228 247 IPR009145 GO:0000398|GO:0003723|GO:0089701
Prci3g0254 785 MobiDBLite consensus disorder prediction 443 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0254 Prci-Chr3 3385494 3393852 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci3g0254 zf-CCCH 0.00022 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0254 K24273 - jre:108988914 660.988