Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0247 ATGGAATTTTCCAGTGAAGAAGGAGAGATCCCAATCCCAATAAACAGTGCCACTTCTTATGGAGGTGGTAATAATGGCCATGGCCACCTGATCCACCATCATCATGAGCCTCCAATCCAAGTCCCTCACCACATGATCTCTAATTCCTCAGTACTACCAGTAGCCTCAGCGCCGCCCCATAACAGCGGGGGAGGAGGAGGAGTAGCCGGTGGCATGGAGGAGGAGGAGGAGGAGGAGGGTCATCACCAGCATGGGCCCTACAGCAGCAAGAAACTAGTGGTGAAGTACAGAGAATGCTTGAAGAACCATGCAGCTTCCATGGGAGGAAATGCCACAGATGGATGTGGAGAGTTCATGCCTAGTGGAGAAGAAGGAACCCTTGAAGCTCTCACTTGCTCAGCCTGCCAATGCCACAGAAACTTCCACAGAAAAGAAGTTGAGGGCCATGAACAACAACAACATGATCATCATTTTCATCAATATCTTCATCATCATCACCACCACCTTCAATATCACAACACTACCAATAATCATCCTTACAGGTTAGGTGGTAGGAAGCTCCTCCTTCCTCCTCCTCCTGAAACTCTTGCTGGCTACCCTACACCACCACCAGGTAACATCCTACCTTCTAGAATGGTCATGCCCTACAATGTCATGGGGTCCCACCACTCATCCCTCCCTTCAGACTTATCTGATGAGCAAGAAGATCATCATCATCATGGGATAATGAGACCATCCCACCATCATCATCAGAACAAGAAGAGGTTCAGGACCAAGTTCACACAGGAGCAGAAGGAGAAGATGCTGGACTTTGCTGAGAGAGTTGGGTGGAAGATTCAGAAACAGGAAGAGTCTGTGGTGCAACAGTTTTGTCAAGAGATTGGTGTGAAGAGAAGAGTGCTTAAGGTTTGGATGCACAACAATAAGCACAGCTCCGCCAAAAAGATCAATCCCACCGCTCCACCACCTCCTCTCACTGCTACTACACCATCTTAA 996 0.4849 MEFSSEEGEIPIPINSATSYGGGNNGHGHLIHHHHEPPIQVPHHMISNSSVLPVASAPPHNSGGGGGVAGGMEEEEEEEGHHQHGPYSSKKLVVKYRECLKNHAASMGGNATDGCGEFMPSGEEGTLEALTCSACQCHRNFHRKEVEGHEQQQHDHHFHQYLHHHHHHLQYHNTTNNHPYRLGGRKLLLPPPPETLAGYPTPPPGNILPSRMVMPYNVMGSHHSSLPSDLSDEQEDHHHHGIMRPSHHHHQNKKRFRTKFTQEQKEKMLDFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHSSAKKINPTAPPPPLTATTPS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0247 331 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 95 146 IPR006456 -
Prci3g0247 331 SUPERFAMILY Homeodomain-like 239 312 IPR009057 -
Prci3g0247 331 NCBIfam homeobox domain, ZF-HD class 253 309 IPR006455 -
Prci3g0247 331 Gene3D - 243 314 - -
Prci3g0247 331 MobiDBLite consensus disorder prediction 317 331 - -
Prci3g0247 331 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 81 311 - -
Prci3g0247 331 FunFam Zinc-finger homeodomain protein 2 242 314 - -
Prci3g0247 331 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 96 145 IPR006456 -
Prci3g0247 331 MobiDBLite consensus disorder prediction 51 89 - -
Prci3g0247 331 MobiDBLite consensus disorder prediction 1 35 - -
Prci3g0247 331 MobiDBLite consensus disorder prediction 222 255 - -
Prci3g0247 331 MobiDBLite consensus disorder prediction 310 331 - -
Prci3g0247 331 Pfam ZF-HD protein dimerisation region 94 146 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0247 Prci-Chr3 3249171 3251670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0247 1 327 ZF-HD Transcription Factor Family AT2G02540 45.946 6.96e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci3g0247 ZF-HD_dimer 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0247 - - pcin:129306662 554.288