Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0228 ATGTCAGAAATGCGGCTTTCTGATCTCCACTTGAAGAAGGAGCTCACCCAAATTCGCAAAGCTGCTCGTGTATTGAGGGATCCTGGTACTACTTCTTCGTGGAAGTCGCCACTTAGTTCGTCGAGATCTGTTGCGGCTGCTTCTGCTTCTGCATGGAAGAACAGTAGCAACTCTCAACTTCATTCCCATTCGTCTCTCCCGAGTGGGAACAACAATGGGAAGGAGAAGATGGTGTTCTTGTACAATTGGAAGAATTACAAATCGTCAAGTGAGAGGCACAATGGTGATGATAAGGACGAAGAAGAAGATTATGATGAAGATGATGGTGGAAATGATGGATCTTCGTCTCTTCTGGGGAGTTTCGAGGATAGCCTTAGTGATGCTCGCAATGGTTGCGATTCCAAGAGCGACACTTGCTTAGGGGTTGGTGGGAATGGGATTCGTTCTTCCATTTTCCGGTGTAAAGATGCAAATCCTGTGGCGTTGGGCACGCCATCGACCAGAAGAGCAATGGATATTAAGAAAAAAAAGAGCAAGAAAAGCAAAAATGCCCATTTGGATACTCTCAGAAAATATCAGCAAAGAGAAACCAACCTTGGTAAAGCTATGGTGAATCCCAAGCATCATATTCACCAGTCAATAGCTTATAGCCGAGAGGACTCAGTAGGGCCGTCTGATGATACTGAAGATTGCTGCAATTCTGAAGATTTAACACGAAAACCAGGGCCATCTCCTTTGCTTTTGAAGCTTAAGCATAACAATTGGTCTCGCTCTAACTCCAAGTTATTGAGAAGTAATAGAAAAGAGGATTCTTCTTATAGTACCCCTGCAATGTCAACCAGTTCCTATAATAGGTACGGTCAACATAATCCCAGTACTGTCGGATCCTGGGATGGCACGACAACCTCCTTAAATGATGCTGATGATGAAGTAGATGATCTTTTGGATTTGCCTGGTCGCCAAGGATGCGGTATACCTTGCTATTGGTCAAAGAAGACTCCAAAACATAGAGGGATGTGTAGGAGTTGTTATTCACCTTCACTTTCAGACACTTTAAGGAGGAAAGGAAGTAGCATGCTTTGTGGTAGTCAAACTATCTATCCTAGACACCGGAGATCCTTGTCAAGCTCTCACAAGCGGAGAATTTCCTCAAGGAGTGCTCAAGGTGTTCTCCCATTGCTCACTAACAAGGATGATGCCAGAGGGTCACCTCTAGGAACTGGCATGAGCGATGATGAACTTTCTACAAACTATGGGGAGCTTGATCTTGAGGGAATAAGCAGGTTGGATGGAAGAAGGTGGTCCTCGAGTTGTAGGAGTCAAGAAGGATGGGAGATTGTAGCTTTCCATGGAGAAGGGGATGATGAAGGCACACCAGAAAATAGTAGGAGTTTCAGTCAAAAGTATAAACCTATGTTCTTTAGTGAATTGATTGGGCAGAATATTGTGGTCCAGTCCCTTATAAATGCTGTTTCAAGAGGTCGAATTGCTCCTGTTTATCTTTTCCAAGGTCCACGTGGAACTGGTAAAACATCAACGGCCAGGATTTTTGCCGGTGCACTGAATTGTATAGCTCCTGATGAAACTAAGCCTTGTGGCTACTGCAGGGAATGTACAGATTTCATTTCTGGAAAGAGCAGGGACCTTTTGGAAGTTGACGGAACCAATAAAAAAGGGATTGATAGAGTTAGACATCTATTGAAAAGATTATCAGTTAGCTCTTCATCAGCCTCCTCACGATACATGGTTTTTGTTATTGACGAGTGTCATTTGTTACCCTCTAAGACATGGTTGGCATTTCTTAAATCTCTGGAAGATCTACCTCAGCGAGTTGTGTTCATATTTATAACCACAGATCTTGACAATGTGCCCCGGACAATACAATCTAGATGCCAGAAGTACCTTTTCAACAAAATTAGAGATGCAGATATAATAGCACGTCTGAGGAAAATATCTGCTGAGGAGAACCTGGATATTGAAACAGATGCGTTGGATCTTATTGCTATGAATGCAGATGGCTCACTTCGGGATGCAGAAACTATGTTAGAACAGCTGAGTTTGCTGGGAAAAAGAATTACTACTAGTCTTGTCAATGAACTTGTGGGGGTTGTTTCAGATGAAAAATTGCTGGAACTTTTGGAGTTGGCAATGTCATCAGACACTGCAGAAACAGTGAAAAGGGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATTGTTTTGATGTCCCAACTGGCTAGCCTCATTATGGACATCATTGCCGGATCATATACTGTCATAGATGACAAACCTGGTGATTCAGTTTTTGGCGGACGAAGTTTGAATGAATCGGAGTTGGAGAGATTAAAGCATGCTTTGAAGCTACTCTCAGAGGCTGAGAAACAGTTGAGGACTTCTAGTGAACGCTCAACATGGTTCACAGCTACTCTGTTACAGCTTGGTTCAATGCCTTCGCCAGATATTACTCTGACCAGCAGTAGCAGGAGGCAGAGCTGCAAGACAACTGACGGTGATCCATCAAATGCTTCAAGAGAAGTAACTGCTCACAAGCACAGGTCAGATGTTCAGTCTATGCCTTGGAAATCAACATCACCTGCATCTCTGCAGAAAGTTGTAAAAAGCAATCCCAGCCACCAAAGGGAGTTATCATCAAAGTCTGATGGTTTCAGCTTGAATTCAAAGCCGTCAAATAGCCCAGTCATAGATGATGATGCCGCACCTGTTTCATTTGATGATCATACAATTAGTAATGTGACATTTAGATGCGTAGATTCAGGAAAGTTATGTGATATCTGGGCACGTTGTATTGGAAGGTGTCACTCAAAGACATTGAAGCAGCTGCTACATAATCATGGAAAACTTGTATCCATTCGTGAAGTTGAAGGTCTGCTGGTTGCATACGTTGTGTTTGGGGATGCAGATATTAAACTTAGGGCCGAAAGGTTTTTGAGTAGCATTACAAATTCAATGGAAATGGTTTTGAGACGAAATGTTGAGGTCAGAATTATCCACTTGCTTGATGGTGAAAGTGAAGATCAGATCAATCGGTCAGGCCCAAAACAGGCAGAATCAATAATAGCAAACGAGAAGGAACGTAGAGAAGGTCATACAAGAGGAAGAAATACTTTCTCAGATTTTTCTCCTTTGGCGGATGGAAGCTTTCAATCTGCCAATGATTCATCGGATTTACTGGTTGATGGAAATGGAGTAAGAGAGAGATCAGATATTCCAATGCAAAGGATTGAATCCATCATTCGTGAGCAGAGGCTGGAAACTGCTTGGTTACAGGCCGTAGGAAAAGGCTCCCCAGGATCATTAAGTCGATTGAGACCTGAAAAGAATCAGGTCCTGCCTCAGGAAGGTATCTACTGTAAAGACCCAACAGAGTCCATGGACTCCACAAGATTCTCCTTTCAGCGTAGGGAAGATGACATCAGTCATGAAGTCAAAGTTTTGAAAGCTAAAAATGGAAGGGTCCTACAGAAGGATCAGATTGGAATTGGAAGAAGAGTTGACTGTTACTCCATGTCCCCTAGTTTATTGCATGATGGCAGTTTAGTAACAACTTCCATCAAAGACAGTCTGGGATATGAATCAGGCCCAGGAGCAAGAGGTTGTAGCGGATTTTTGTGTTGGAATAACTCCAACCGTAGAAGGGTAAAGGTAAAAGGTACCCCAGTGAGGAAAGTAGGACGCTTTTCATTGTTTGGTGAGTGTGGTAAATCAGAGAAAAAGAGTTGA 3741 0.4296 MSEMRLSDLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAASASAWKNSSNSQLHSHSSLPSGNNNGKEKMVFLYNWKNYKSSSERHNGDDKDEEEDYDEDDGGNDGSSSLLGSFEDSLSDARNGCDSKSDTCLGVGGNGIRSSIFRCKDANPVALGTPSTRRAMDIKKKKSKKSKNAHLDTLRKYQQRETNLGKAMVNPKHHIHQSIAYSREDSVGPSDDTEDCCNSEDLTRKPGPSPLLLKLKHNNWSRSNSKLLRSNRKEDSSYSTPAMSTSSYNRYGQHNPSTVGSWDGTTTSLNDADDEVDDLLDLPGRQGCGIPCYWSKKTPKHRGMCRSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSLSSSHKRRISSRSAQGVLPLLTNKDDARGSPLGTGMSDDELSTNYGELDLEGISRLDGRRWSSSCRSQEGWEIVAFHGEGDDEGTPENSRSFSQKYKPMFFSELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAGALNCIAPDETKPCGYCRECTDFISGKSRDLLEVDGTNKKGIDRVRHLLKRLSVSSSSASSRYMVFVIDECHLLPSKTWLAFLKSLEDLPQRVVFIFITTDLDNVPRTIQSRCQKYLFNKIRDADIIARLRKISAEENLDIETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGSYTVIDDKPGDSVFGGRSLNESELERLKHALKLLSEAEKQLRTSSERSTWFTATLLQLGSMPSPDITLTSSSRRQSCKTTDGDPSNASREVTAHKHRSDVQSMPWKSTSPASLQKVVKSNPSHQRELSSKSDGFSLNSKPSNSPVIDDDAAPVSFDDHTISNVTFRCVDSGKLCDIWARCIGRCHSKTLKQLLHNHGKLVSIREVEGLLVAYVVFGDADIKLRAERFLSSITNSMEMVLRRNVEVRIIHLLDGESEDQINRSGPKQAESIIANEKERREGHTRGRNTFSDFSPLADGSFQSANDSSDLLVDGNGVRERSDIPMQRIESIIREQRLETAWLQAVGKGSPGSLSRLRPEKNQVLPQEGIYCKDPTESMDSTRFSFQRREDDISHEVKVLKAKNGRVLQKDQIGIGRRVDCYSMSPSLLHDGSLVTTSIKDSLGYESGPGARGCSGFLCWNNSNRRRVKVKGTPVRKVGRFSLFGECGKSEKKS 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0228 1246 CDD HLD_clamp_pol_III_gamma_tau 639 702 IPR045085 -
Prci3g0228 1246 NCBIfam DNA polymerase III subunit gamma/tau 464 813 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Prci3g0228 1246 Gene3D - 703 817 - -
Prci3g0228 1246 MobiDBLite consensus disorder prediction 29 50 - -
Prci3g0228 1246 MobiDBLite consensus disorder prediction 89 120 - -
Prci3g0228 1246 SUPERFAMILY post-AAA+ oligomerization domain-like 710 811 IPR008921 GO:0003677|GO:0006260
Prci3g0228 1246 Gene3D - 641 702 - -
Prci3g0228 1246 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 466 865 - -
Prci3g0228 1246 Coils Coil 775 802 - -
Prci3g0228 1246 SMART AAA_5 496 658 IPR003593 GO:0016887
Prci3g0228 1246 Pfam DNA polymerase III, delta subunit 479 639 - -
Prci3g0228 1246 FunFam DNA polymerase III subunit gamma/tau 640 702 - -
Prci3g0228 1246 FunFam DNA polymerase III subunit gamma/tau 460 638 - -
Prci3g0228 1246 CDD AAA 478 636 - -
Prci3g0228 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 686 IPR027417 -
Prci3g0228 1246 MobiDBLite consensus disorder prediction 817 842 - -
Prci3g0228 1246 Gene3D - 456 637 IPR027417 -
Prci3g0228 1246 MobiDBLite consensus disorder prediction 22 50 - -
Prci3g0228 1246 MobiDBLite consensus disorder prediction 269 301 - -
Prci3g0228 1246 MobiDBLite consensus disorder prediction 817 905 - -
Prci3g0228 1246 MobiDBLite consensus disorder prediction 857 899 - -
Prci3g0228 1246 Pfam DNA polymerase III subunits gamma and tau domain III 693 804 IPR022754 GO:0003887
Prci3g0228 1246 MobiDBLite consensus disorder prediction 217 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0228 Prci-Chr3 3029748 3038206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0228 460 762 Core DNA Replication Machinery Family AT1G21690 24.359 2.44e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0228 - - adu:107471079 1645.94