Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0216 ATGGCAATTGCAGCAACCTCTTCATCCCCCACCATGAGCCTCATCAGCCACAGCCACAGCCACGACGACACGACCACAACCGCCGCCACCTCCTCTGCCACTAATGACTGCGGCGGTGCCCTCAGGCATCCCGACGACGATGAAGACGAAGATGAAAACGGCATCAACAACGACGACCACCACCAGCAAGATATGGTCATGCCGGGCTTCCGCTTCCACCCAACGGAAGAAGAACTGGTCGAGTTCTACCTCCGCCGGAAAGTCGAAGGCAAGCGTTTCAACGTCGAGCTCATCACCTTCCTCGATCTCTATCGTTACGATCCATGGGAGCTTCCTGCTATGGCGGCGATCGGAGAGAAGGAGTGGTACTTCTACGTCCCGAGAGACAGGAAGTATCGGAACGGAGATAGGCCGAACAGGGTGACGACGTCGGGGTACTGGAAGGCGACAGGAGCTGATAGAATGATTCGAGCGGCGGAGAGTTCAAGGTCGATCGGGTTGAAGAAAACCCTAGTTTTCTACTCTGGAAAAGCTCCCAAAGGGATTCGAACCAGTTGGATTATGAATGAGTATCGCTTGCCTCACCATGAAACCCAACGCTTGCAAAAGGCTGAGATATCTCTGTGTCGAGTGTACAAGAGACCAGGTGTAGAAGACCACCCTTCTCTTCCTCGCAGTCTTCCAACCAGACTGTCCACTTCATCACCATCAAAACCTTCTTCAGAGAAGAATTATCATAAGCACAACAACGTTGTTCCAGAGATGTTTCATCATCATCATCATGAAAACATGGGATTATTTCTGGAACAACCTCATCATCATCATCATCATCAAGATCAGCAAATTACCAACGAAACTGATCAGGGAAGCAGTAGCAGTACTGCTGCTACAACTACCACCACCACCACTAACAACAACAACAACAGTTCAGTATTAATGATGGATGATCTGAATAGGATAGTGACTTATAATAATAATAACCAACAATATTTACAATACTATAATAGTGGTATGATTAATCCTCCTCCTTCTGAGAATCATCATCATCTTCAGTTCTCTAACCTGCTATTGCAGCAGCAGCCCCAAGTTCAGCAACCAATGGTGGCTCTGAATGCTTCTCTTCCAATTACCTCTTTCTCTGACAGATTGTGGGAGTGGAATCCATTAATCCCTGAAGCTGCAAACCGGGAGTTCAGTAATATGTCCTTCAAGTAA 1215 0.4774 MAIAATSSSPTMSLISHSHSHDDTTTTAATSSATNDCGGALRHPDDDEDEDENGINNDDHHQQDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRAAESSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETQRLQKAEISLCRVYKRPGVEDHPSLPRSLPTRLSTSSPSKPSSEKNYHKHNNVVPEMFHHHHHENMGLFLEQPHHHHHHQDQQITNETDQGSSSSTAATTTTTTTNNNNNSSVLMMDDLNRIVTYNNNNQQYLQYYNSGMINPPPSENHHHLQFSNLLLQQQPQVQQPMVALNASLPITSFSDRLWEWNPLIPEAANREFSNMSFK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0216 404 MobiDBLite consensus disorder prediction 1 37 - -
Prci3g0216 404 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 64 304 - -
Prci3g0216 404 MobiDBLite consensus disorder prediction 217 246 - -
Prci3g0216 404 MobiDBLite consensus disorder prediction 1 65 - -
Prci3g0216 404 FunFam NAC domain-containing protein 35 75 217 - -
Prci3g0216 404 MobiDBLite consensus disorder prediction 226 240 - -
Prci3g0216 404 Gene3D NAC domain 75 217 IPR036093 GO:0003677|GO:0006355
Prci3g0216 404 Pfam No apical meristem (NAM) protein 68 193 IPR003441 GO:0003677|GO:0006355
Prci3g0216 404 MobiDBLite consensus disorder prediction 283 310 - -
Prci3g0216 404 SUPERFAMILY NAC domain 65 214 IPR036093 GO:0003677|GO:0006355
Prci3g0216 404 ProSiteProfiles NAC domain profile. 66 214 IPR003441 GO:0003677|GO:0006355
Prci3g0216 404 MobiDBLite consensus disorder prediction 272 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0216 Prci-Chr3 2913729 2918941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0216 56 264 NAC Transcription Factor Family AT1G26870 46.460 2.23e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci3g0216 NAM 4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0216 - - pcin:129305223 724.546