Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0147 ATGCAGAGTCAGCTTGTGTGTAGTGGGTGCAGGAGCGTTTTGCTTTACCCTAGGGGGGCAACTAATGTTTGCTGTGCATTGTGCAACGCAATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTGTTGTGGAGGTTGTAGGACATTGCTGATGTACACACGGGGAGCTACAAGTGTTAGATGCTCTTGCTGTCATACTGTGAACCTTGCACCAGCCCATATACACTGTGGGAACTGCCGGACAACTCTAATGTATCCGTATGGAGCTACATCAGTCAGATGTGCAGTTTGTCAGTATATAACTGATACTAGTAGGACCAATGGAAGGGTTCCCAATCCTGTCCACAGACCAAATGGAACAACCAATTCTGGAACAGCACCTTCTACTTCAACGTCGATGCCCCATTCTCAAGGCCAAACTGTTGTGGTGGAAAATCCCATGTCTGTTGATGCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTAACAACAGAGAAGAAATAA 516 0.4651 MQSQLVCSGCRSVLLYPRGATNVCCALCNAITSVPPPGMEMSQLCCGGCRTLLMYTRGATSVRCSCCHTVNLAPAHIHCGNCRTTLMYPYGATSVRCAVCQYITDTSRTNGRVPNPVHRPNGTTNSGTAPSTSTSMPHSQGQTVVVENPMSVDASGKLVSNVVVGVTTEKK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0147 171 Pfam LSD1 zinc finger 7 31 IPR005735 -
Prci3g0147 171 Pfam LSD1 zinc finger 46 70 IPR005735 -
Prci3g0147 171 Pfam LSD1 zinc finger 79 103 IPR005735 -
Prci3g0147 171 PANTHER PROTEIN LSD1 2 170 IPR040319 -
Prci3g0147 171 MobiDBLite consensus disorder prediction 111 141 - -
Prci3g0147 171 NCBIfam zinc finger domain, LSD1 subclass 76 104 IPR005735 -
Prci3g0147 171 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Prci3g0147 171 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0147 Prci-Chr3 2170802 2179990 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Prci3g0147 zf-LSD1 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0147 - - gmx:100776394 312.768