Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0114 ATGGGTGCTCCTAAGCAGAAGTGGACACAAGAAGAAGAAGCAGCACTAAAAGCTGGAGTTGTTAAGCATGGGGTTGGGAAATGGCGCACAATACTTAAGGATCCAGAATTTAGTAGTGTCTTGTTTCTGCGGTCTAATGTAGATCTTAAGGATAAATGGAGAAATCTGAGTGTAATGGCAAATGGATGGAGCTCCCGGGACAAGTCTAGATTAGCGGGTAGAAGGGCACATCAGGTCCCAAAACAAGATGAAAATGCTATGATTGCCCCTTCTGTTGTTCCGAGCGACGAAGAACTTGTGGATGCCAGGGCTTCTCAAGTTCCTAGAGATATGCTGCAGATTCCTGGTCCAAAGAGGTCTATTGTAAGATTGGATAACCTGATAATGGAAGCAATAGCTAGCTTGAGGGAGCCTGGTGGTTCCAACAAGACAAATATTGCAGCTTACATAGAGGACCAATATTGGGCACCCCAAGACTTCAGAAGGTCATTGTCAGCAAAACTAAAATCGTTGACAGCTAGTGGAAAACTGATCAAGGTGAAACGCAAATATAGGATTGCTCCTACGCCAGCATATCCAGACCGAAGAAGAAACTCATCCATGTTATTGTCTGATGCAAGGCAGAGATTCTCTATGAAGATAGATAAGGATGAGGCCAATGTCATCACAAAGTCTCAGATAGATTTAGAACTAGCAAAGATAAGGTCGATGACAGCACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCAGAAGCTGAAGAAGCAGCAAAGGAGGCAGAGGCTGCTGAAGCTGATGCAGAGGCAGCACAAGCTTTTGCAGATGCTGCAATGAAGACTCTTAATGGGAGAACCACCCCCAAATTGACATGTGGCTTGAGCTGGGGAGATTTGATATTGCAGAGGCAGTCCGTAGAGCTGATGCGAGCCTGA 954 0.4591 MGAPKQKWTQEEEAALKAGVVKHGVGKWRTILKDPEFSSVLFLRSNVDLKDKWRNLSVMANGWSSRDKSRLAGRRAHQVPKQDENAMIAPSVVPSDEELVDARASQVPRDMLQIPGPKRSIVRLDNLIMEAIASLREPGGSNKTNIAAYIEDQYWAPQDFRRSLSAKLKSLTASGKLIKVKRKYRIAPTPAYPDRRRNSSMLLSDARQRFSMKIDKDEANVITKSQIDLELAKIRSMTAQEAAAVAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADAAMKTLNGRTTPKLTCGLSWGDLILQRQSVELMRA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0114 317 Gene3D - 118 197 IPR036388 -
Prci3g0114 317 SUPERFAMILY "Winged helix" DNA-binding domain 118 197 IPR036390 -
Prci3g0114 317 FunFam Telomere repeat-binding factor 1 118 198 - -
Prci3g0114 317 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci3g0114 317 Coils Coil 243 280 - -
Prci3g0114 317 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Prci3g0114 317 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Prci3g0114 317 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Prci3g0114 317 FunFam Telomere repeat-binding factor 1 8 86 - -
Prci3g0114 317 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Prci3g0114 317 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci3g0114 317 SMART sant 4 59 IPR001005 -
Prci3g0114 317 Gene3D - 2 59 - -
Prci3g0114 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Prci3g0114 317 FunFam Telomere repeat-binding factor 1 2 58 - -
Prci3g0114 317 CDD SANT_TRF 6 56 - -
Prci3g0114 317 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0114 Prci-Chr3 1704315 1711096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0114 1 240 Single Myb Histone (SMH) Gene Family AT1G49950 61.290 1.62e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci3g0114 Linker_histone 3.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0114 K09422 - jre:108979731 373.629