Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0083 ATGGAACAGTCGAAATTGGCTGCAGAATCTCCCTACAAGGAGATATCAGCCAGATGGGATCCAAATGAAGCATGCTTGCCTGTAATTGATGAAGCACCTGTATTTTATCCGACTGCTGAGGAGTTTGAGGACACCCTTGGTTACATAGCAAAGATACGCCCTCTGGCTGAACCACATGGCATATGTAGGATAGTCCCTCCACCTTGCTGGATTCCACCCTGTCCTCTGAAGGAGAAAGATATTTGGGAAAATGCTAAATTTCCCACCCGTATTCAGCAGATTGACTTGCTTCAAAATAGAGAGCCAATGAGAAAGAAAAGCAAGGGAAGGAAACGGAAACGAAGAAAGAATTCTAAAATGGCAACCTGTAGGAGACTTGCTAATCCAGATTCAGAAGTTAATGCTGCTTCTGAATCTGAAGAAAAATTTGGATTCCAATCAGGACTTGATTTCACACTAAGAGACTTTCAGCAATATGCTGCTTTTTTTAAAGAATGCTACTTTGGGTTGAAAGATATCAAAGACAATGGACAAATTTGTGATGATAATTATCAGAAAAGGCAGGAGCCCTCTGTGAAGGAAATTGAAGGTGAATATTGGCGAATAATTGAGCAACCAACTGATGAGGTCGAGGTGTATTATGGAGCTGACCTAGAAACTGGGGCACTTGGAAGTGGTTTTCCAAAGGCTGATTCCTTAACTAAGAGTGACTTGGATCAGTATACACTATCTGGCTGGAATCTGAATAATTTCCCTCGGCTTCCAGGTTCTGTATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTCTGGTGCCTTGGCTATATGTTGGGATGTGTTTTTCATCATTTTGCTGGCACGTTGAGGATCATCACCTTTATTCGCTAAATTATTTGCACTGGGGTGATCCAAAAGTCTGGTATGGAGTACCTGGCAGCCATGCTACAGCTTTGGAGGGTGCGATGAGGAAGCATATGCCTGATTTGTTTGAGGAGCAACCAAATTTACTTAATGAACTGGTCACTCAACTATCACCTTCAATTCTTAAATCTGAAGGAGTGCCTATATTTCGCACTGTCCAGCATTCTGGGGAATTTGTAATTACCTTTCCAAGAGCATACCATGCTGGCTTCAACTGTGGTTTCAACTGTGCAGAAGCAGTGAATGTTGCTCCTGTAGATTGGTTACTGCATGGACAGAATGCTGTTGAACTTTATAGTAAGCAGTGCCGTAAAACATCATTGTCACATGACAAGTTGTTATTAGGATCAGCCCAGGAAGCTATACAGGCCCTTGCCGAGGTCGTTCTTGAAGGAAAGGAAACTCCAAAAAATTTGAAATGGAAAAGTGTCTGTGGGAAAGATAGTGTTCTTACCAACGCAGTTAAGACAAGGATAAAGATTGAGGAAGAGCAGTTACAGTGCCTTCGAACTCCTATAAAATTGCTGAAAATGGATATCAACTTTGATTTGGATAGGGAAAGAGAATGCTTTGCTTGCTTCTATGATTTGCACCTTTCTGCTGCAGGCTGCCAATGCTCTGTTGATAAATACTCTTGTCTAAAACACTCAAATTCATTTTGCTCATGTGGAGTTGACGAAAGATTTATTCTAATTCGTTATACTATGGAGGAGCTGAAAGAGTTGGTTAAAGCATTAGAAGGAGAGTTAGAACCTATCAAGGTTTGGGCGAACAGGACCTCTGGCGTGGTTTCTGTAGATGCTGGGGACGTTTGTTTAGATAAGCCATATGTGGGCAGAGAAGTGTGCAAAACTAAGATCAATGAAGTGGAAAGTTCATCTTCTTCTGCAAGAATCAAGAAGTCAAAACTAAATGAAGATCCTCATAGTCATGTTTCTTCAGAATTAGTCCAGTCAGATTCTCAAGTGGAAAGTGCACCACAGCACATTGTAGATAGTCATAATGACAATGTTAATGTCAAATGTTTGGTCATGGATGATGGAATTAAGGTTGCATGGAATTGTTGCATGGGTTTAAATCTTAATGTTCTGTCTGATCAAAATGAAAATTATATCCTGCCTATTGCTGATAGCAAATCAAACAAGGGTATTGGTTGTGTTGAAAAAGTCTGTTGCCCAGACTCGCTAAAGGAACAAGATGATGTGGTACTCGAAGGAAATGTATCAGACATGTTTTCTCCATTGAAGAAAGATTACTCATTGTGTTCTAGGGGTGATCGAACTTCTAGTAAATTTGATGGTGGCAAGATGTCTGTGGATGATCTGTCAATGCATCAGAGAATGAGAGTATTACCTAACAGTGCATGTAAAATGGAAGCAATAGACAGTTTCAATAAAAGTACATCTTTGGAAAACCAAAGCTTTCTAATTCGAAAGTTTGCAATATCTGTTGAACCTATAAGCCTCGGCTCCATTGTGCATGGAAAGCTGTGGTGCGGTAAGCACATGATATGTCCAAAAGGATTCAAGAGTCGTGTCAAGTTCTTTAGCATGCTTAATCCATCAAGAATCTGTAGCTATATTTCTGAAGTTCTTGATGGTGGCTTAATCGGACCTCTTTTCAAGGTTAGTATGGAAGAACATCCAAGTCAAGGTTTCACGAACATGTCAGCAGAGAAATGCTGGGAATCAGTTCTGGAGAGAGTAAATCGTGAGATCATCAGGCGCAGAAGCCAAGGGGAACTAAAACTTCCTCCATTGGAGCTTCTGCAAAGCATCCATGGTTTAAAAATGTTTGGGTTCCTTTCTCCATCAATTATCCAGGGTATTGAAGCTCTTGATCCCAGTCATCAATGCATAGAGTACTGGAATCACAAGGAATTAATCTCTTCTGTATCTTCCAGCAGTGCAAGTGATGACGTTAAGTTTGTGCATGGCAGTTCAAGTAGCCTGTCAGATGATGTCGACACCAAATTTTTCGGCATTGATTTGACAAAGCAGGATGAAAATGATGATAAACTTGCAGGAGCAAATCGCGACTCGTTTGAAGGGATGAAACTTATACTGGAAGCATTGTTGAAGAAAGCGAGTCCTGATGAGTTAAGCACAATGCAGAAGTTACTGGGGTCTGATGCTGAAAGTTCTCAGTGGAGAGTGGAAATTGCGGCACTGATAGAGGAGATCCAGAAAAGCTTGTAG 3117 0.4087 MEQSKLAAESPYKEISARWDPNEACLPVIDEAPVFYPTAEEFEDTLGYIAKIRPLAEPHGICRIVPPPCWIPPCPLKEKDIWENAKFPTRIQQIDLLQNREPMRKKSKGRKRKRRKNSKMATCRRLANPDSEVNAASESEEKFGFQSGLDFTLRDFQQYAAFFKECYFGLKDIKDNGQICDDNYQKRQEPSVKEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKADSLTKSDLDQYTLSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHATALEGAMRKHMPDLFEEQPNLLNELVTQLSPSILKSEGVPIFRTVQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPVDWLLHGQNAVELYSKQCRKTSLSHDKLLLGSAQEAIQALAEVVLEGKETPKNLKWKSVCGKDSVLTNAVKTRIKIEEEQLQCLRTPIKLLKMDINFDLDRERECFACFYDLHLSAAGCQCSVDKYSCLKHSNSFCSCGVDERFILIRYTMEELKELVKALEGELEPIKVWANRTSGVVSVDAGDVCLDKPYVGREVCKTKINEVESSSSSARIKKSKLNEDPHSHVSSELVQSDSQVESAPQHIVDSHNDNVNVKCLVMDDGIKVAWNCCMGLNLNVLSDQNENYILPIADSKSNKGIGCVEKVCCPDSLKEQDDVVLEGNVSDMFSPLKKDYSLCSRGDRTSSKFDGGKMSVDDLSMHQRMRVLPNSACKMEAIDSFNKSTSLENQSFLIRKFAISVEPISLGSIVHGKLWCGKHMICPKGFKSRVKFFSMLNPSRICSYISEVLDGGLIGPLFKVSMEEHPSQGFTNMSAEKCWESVLERVNREIIRRRSQGELKLPPLELLQSIHGLKMFGFLSPSIIQGIEALDPSHQCIEYWNHKELISSVSSSSASDDVKFVHGSSSSLSDDVDTKFFGIDLTKQDENDDKLAGANRDSFEGMKLILEALLKKASPDELSTMQKLLGSDAESSQWRVEIAALIEEIQKSL 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0083 1038 Gene3D - 788 926 - -
Prci3g0083 1038 Pfam JmjC domain, hydroxylase 273 389 IPR003347 -
Prci3g0083 1038 SMART fyrc_3 846 934 IPR003889 GO:0005634
Prci3g0083 1038 ProSiteProfiles FYR domain FYRN motif profile. 782 840 IPR003888 GO:0005634
Prci3g0083 1038 ProSiteProfiles FYR domain FYRC motif profile. 842 932 IPR003889 GO:0005634
Prci3g0083 1038 Pfam jmjN domain 33 66 IPR003349 -
Prci3g0083 1038 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 819 - -
Prci3g0083 1038 Pfam C5HC2 zinc finger 496 548 IPR004198 -
Prci3g0083 1038 ProSiteProfiles JmjN domain profile. 32 73 IPR003349 -
Prci3g0083 1038 ProSiteProfiles JmjC domain profile. 240 406 IPR003347 -
Prci3g0083 1038 FunFam Putative lysine-specific demethylase JMJ16 788 926 - -
Prci3g0083 1038 Gene3D Cupin 17 390 - -
Prci3g0083 1038 MobiDBLite consensus disorder prediction 104 121 - -
Prci3g0083 1038 SMART fyrn_3 796 840 IPR003888 GO:0005634
Prci3g0083 1038 Pfam F/Y-rich N-terminus 793 837 IPR003888 GO:0005634
Prci3g0083 1038 SMART cupin_9 240 406 IPR003347 -
Prci3g0083 1038 SMART JmjN_1 31 72 IPR003349 -
Prci3g0083 1038 MobiDBLite consensus disorder prediction 98 123 - -
Prci3g0083 1038 SUPERFAMILY Clavaminate synthase-like 246 428 - -
Prci3g0083 1038 Pfam F/Y rich C-terminus 844 930 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0083 Prci-Chr3 1237052 1245808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0083 763 970 JUMONJI Transcription Factor Family AT1G30810 49.519 1.47e-52 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci3g0083 JmjC 1.1e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0083 K11446 - gmx:100814590 1363.21