Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci398g0004 ATGGCGATTCAAGTGGCGGCGCCATCATCATCCCTTGGCTTCACCAGCAGCAAAACCAAGTATAGATATGATGTTTTCCTCAGTTTCAGGGGTGAAGATACTCGACTCACCTTCACTGTTCGTCTCCACGATGCTCTGTGCCGGAAGGGAATCAACGCCTTCATCGACGACAAGAAGCTCGCGAAAGGGGAAGAGATCTCACCTACGCTTCTCAAAGCCATAGAGAAATCCAGGATTTCCATTATTGTGTTCTCCACCAACTATGCTACTTCAACGTGGTGCCTCGAGGAACTTGCCCGCATCGTTTGGTGTAGGAAGCAGAAGAACCAGGTGGTGATGCCCATCTTCTACAAGGTGGATCCCTTGGATGTTCAGAAGCAAAGAAATAGCTTTGGAGAAGCCATGGCTGATCATAAAGCTGGTAGGTTCAAGAATGAACAGGAGAAAGTGCAAAAATGGAGGGCCGCTTTGCATGAAGCTGCTAGTTTGTCACCAGCATGGCTTTTCGAAGATGGATGTGAATCTGGCTTTATTGAAAGGATTGTCGAACATGCATATTCTATGATACCTCCTAAACGCTTCCAGAACATTGATCATATGGTTGGACTTGAAACTCGCATAGAGGAAGTGATGTCACTTATGGATAAATCTGATGACCGAGTTTGTATGTTGGGCATTTATGGAACTGGTGGAATAGGAAAAACAACACTTGCAAAAGCTTTGTATAAATTAATCTTCTACCAATTTGACGGTGCATGTTTTTTGTTTGATGTTCGAGAAGAATCAAATAAATATCAAAGTATTATTCGTCTTCAACAGACACTTCTATCAGAGATTCTTGGGGAACAGAAAATGCAGCTTAATAGTGTTGATGAAGGAATCTCATACATAAAACACAGACTCTCTAGCAAGAAGGTTTTGTTGGTTCTGGATGATGTTGATGAGTTTAAACAGTTAGAACAACTTGCAGGGGGGCGTGATTGGTTTGGTTGTGGAAGCAAGATTATTATAACAACAAGAAATAAGGAATTGCTCATTGCACGTAATGTTGAGAAAACATATGAAGTGAAGGAGCTAAGTCGACTTTGCTCTCTTGAACTCTTCTGTTGGCATGCCTTTCGTATGAGCCAACCTCCAAATGGCTATGAAAATATGTCCAATCATGTTATTAGATATGTACATGGCCTTCCTCTAGCTTTAAAATTAGTAGGCTCCAATTTGGCACATAAGGACTTTGAAGAATGGAGATCTACGTTGGAACAGTACAAGAGAATCCCTGAAAGAACAATCCATGAGGTACTTAAGATAAGCTATGATTGCTTACCAGATGGTGCTAAGCGTGTTTTTCTAGATATTGCTTGTTTCTTTAAGAAGAAGGCATTAGAATTCATTGAAGACATACTAGAAGCTTGTGATGATGGGGCAAGGTTTTATATTGAAGTCCTTGTTGATAAATCTCTGATCACTATTGATGAAAATAGCAGTCGCTTGTACATGCATGATCTCATACAACAAATGGGCAAGGAGATTGTTAGGCAAGAAGGGCCATCAAATCTTGGTCAACGCAGTAGATTATGGTATTACAGAGATGTTCTTGAAGTGCTACAAGAAAATTCAGGAAGCAGTAATATTGAAGGAATAATACTTGATCCACCTCATCAAGAAAAAGTGGAGTGGGGTGGTATAGCATTTGAGAAGATGAATAATCTCAAGATTCTCATCATTCGAAATGCCCAATTTTCAACAAGTTCTAAATATTTTCCAAATACTTTAAGATTACTTGACTGGAAAGGATATCCTTCTATGACTTTACCGCCAAATTTTTCTCCTTCGAAGCTAATTTGCTTGAAGTTAAATGGAAGTCAGTTCACATTGGAAGAGCCATTCAAGAATGTGGAAGACCTGGATCTATCAGGGAATGATTTTGTGTCACTTCCTGAGTGCATTAAAGAGTGTGCGTATTTGGAGAGACTATCTCTGACTAACTGCAAGAGGCTAAGAGACATAGTGGAGCTGCCATCATCGCTGCAACACATAGCTGCGGAGAACTGCATGTCATTAACTATGGAATCGATAGGCCGTTTATGGTCTCAGGCGAAAGAGGGCTTTGCCATGGAAATCGTTATGCCGGCAACAACATTTCCTGATTGGTTAGACTATTGTTGTAAAGGAGCAAAATTGTCTTTTCGTGTTCGTGGAAATATGCCTCGTATCGTCTTCGCATACCAGACGGGGAAAGCAAACACAAAGTGGGTTTACATGGTGGAAGTTTTTATGAGCATCAACGGTTGTAATAAAATGCCATGGATACAAACTGATCGTGTTGCAAGGAAAAGGGGTCGTGTTTTGTATAAAGTAGGTGATCAAGGTCATGTATATTTCTTTGATCTGCTTAGTGACTTTAGTGAAGAGTTAGAGGAGCTTAATAAGTTTCTGGGATTGGATTGGAATGACGTGGACATACAAGTTACATGTGACCCACCTGATCTCTCCATAGTGAACTGTGGTATTTATGTGGATAAGCGACAAACGAACATGGAGAATATCCAGTTCAAGTCTCCTCTGCTCTCCATGAATGCTTCAACAACTTCATTGAAACGAAAAGCTATAGCTTCTCATCCAAACGAGCCACCCAGGAAGCACCTGAGAAGGTTCAAAGAGAAGACCAATTACACAAATAAAACGACAAGGAAATCTAAACGTCACCAGATTTTTCATTCGCAGTACAAGAGAAAGATGTTTTTTCCAATGGCTAAGCATCTTTGGAGAGCTTTGTACTCTTAG 2784 0.4055 MAIQVAAPSSSLGFTSSKTKYRYDVFLSFRGEDTRLTFTVRLHDALCRKGINAFIDDKKLAKGEEISPTLLKAIEKSRISIIVFSTNYATSTWCLEELARIVWCRKQKNQVVMPIFYKVDPLDVQKQRNSFGEAMADHKAGRFKNEQEKVQKWRAALHEAASLSPAWLFEDGCESGFIERIVEHAYSMIPPKRFQNIDHMVGLETRIEEVMSLMDKSDDRVCMLGIYGTGGIGKTTLAKALYKLIFYQFDGACFLFDVREESNKYQSIIRLQQTLLSEILGEQKMQLNSVDEGISYIKHRLSSKKVLLVLDDVDEFKQLEQLAGGRDWFGCGSKIIITTRNKELLIARNVEKTYEVKELSRLCSLELFCWHAFRMSQPPNGYENMSNHVIRYVHGLPLALKLVGSNLAHKDFEEWRSTLEQYKRIPERTIHEVLKISYDCLPDGAKRVFLDIACFFKKKALEFIEDILEACDDGARFYIEVLVDKSLITIDENSSRLYMHDLIQQMGKEIVRQEGPSNLGQRSRLWYYRDVLEVLQENSGSSNIEGIILDPPHQEKVEWGGIAFEKMNNLKILIIRNAQFSTSSKYFPNTLRLLDWKGYPSMTLPPNFSPSKLICLKLNGSQFTLEEPFKNVEDLDLSGNDFVSLPECIKECAYLERLSLTNCKRLRDIVELPSSLQHIAAENCMSLTMESIGRLWSQAKEGFAMEIVMPATTFPDWLDYCCKGAKLSFRVRGNMPRIVFAYQTGKANTKWVYMVEVFMSINGCNKMPWIQTDRVARKRGRVLYKVGDQGHVYFFDLLSDFSEELEELNKFLGLDWNDVDIQVTCDPPDLSIVNCGIYVDKRQTNMENIQFKSPLLSMNASTTSLKRKAIASHPNEPPRKHLRRFKEKTNYTNKTTRKSKRHQIFHSQYKRKMFFPMAKHLWRALYS 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci398g0004 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 452 IPR027417 -
Prci398g0004 927 Gene3D Ribonuclease Inhibitor 560 700 IPR032675 -
Prci398g0004 927 PRINTS Disease resistance protein signature 393 407 - -
Prci398g0004 927 PRINTS Disease resistance protein signature 650 666 - -
Prci398g0004 927 PRINTS Disease resistance protein signature 300 314 - -
Prci398g0004 927 PRINTS Disease resistance protein signature 223 238 - -
Prci398g0004 927 ProSiteProfiles TIR domain profile. 21 189 IPR000157 GO:0007165
Prci398g0004 927 Pfam NB-ARC domain 204 424 IPR002182 GO:0043531
Prci398g0004 927 Gene3D - 189 353 IPR027417 -
Prci398g0004 927 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 163 IPR035897 -
Prci398g0004 927 SUPERFAMILY "Winged helix" DNA-binding domain 429 536 IPR036390 -
Prci398g0004 927 Gene3D - 359 442 IPR042197 -
Prci398g0004 927 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 190 - -
Prci398g0004 927 SUPERFAMILY L domain-like 513 689 - -
Prci398g0004 927 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 695 IPR044974 GO:0006952
Prci398g0004 927 SMART till_3 22 163 IPR000157 GO:0007165
Prci398g0004 927 Gene3D - 15 188 IPR035897 -
Prci398g0004 927 Pfam TIR domain 23 185 IPR000157 GO:0007165
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci398g0004 14 621 WRKY Transcription Factor Family AT4G12020 31.392 2.24e-74 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci398g0004 - - pcin:129286213 1256.12