Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci396g0006 ATGGGACATAAAAAGCGAAACCCTGCCCCGCGTTCCAAACAATCGGCGGCGGCTTCTCCGGTGACACAATCTGCCATCGGCGGAGCCGCCAATGGCCCTGCCTCAGCCGAGTCCGAGTTGTGCAGGAGTTCTAATCACACTATTCAAAGCACGAGTAAGATCGAGCTGCCTCCTCACCCCGAGCCGTCGGCCTACTCCACTATCAAGCTTGAATGTGAACGAGCCCTCAATGCGCTCAGGCGTGGCAACCACACAAAGGCACTGAGGCTTATGAAGGAGTTATGCTCCAGACACGAGAGCTCCGCTTACTCGGCCTTGATTCACCGAGTTCAAGGTACCATCTGTGTCAAAGTGGCCTCAATTATTGATGATCCAAGTGCGAAGCAAAGACATTTGAAGCATGCTATTGAGTCTGCCCGAAAAGCCGCGGAGCAATCGCCCAGTTCTATTGAGTTCGCACATTTTTATGCAAATTTGTTATACGAGGCAGCGAATGATTCGACTGAATACGAGCAGGTGGTGAAGGAGTGTGAAAAAGCACTCGGGATTTCAAATCCAATTGATCCTGCGAAGGAGAGCTTGCAGGACGAGAGCCAGCAGAAAATATCAACTGCAGACGCCCGGATAGTACATGTTCAGAATGAGTTGCGGCAGCTAATTCAGAAGTCAAACATAGCTTCCTTGTCAACGTGGATGAAGAATCTTGGTAATGGGGAGGAGAAATTCCGTTTGATTCCGATAAGGAGGGCTACAGAGGACCCAATGGAGGTGAGGTTAGTTCAAGCTAGAAGGCCAAATGAGATAAAAAAGGTGACCAAGACACCTGAGGAGAGAAGAAAAGAAATTGAAGTTCGAGTGGCTGCTGCAAGGCTGCTGCAGCAAAAGTCAGAGTCACCCCAATCCCAGAACGAAGGGGACAGGGATGACAGGACATTGGATTCATCTTCAGGATCTGGGCAGAGGATAAGTGAGAGGCGGAAGTATGGACATGTCCGAAAAGCTGGCTCTACATCTGAAAGGAGAGATTGGGTACGTTTATATTGGAATTCGATGAGTATTGATTTGAAGAAGGAGTTTCTTAGGATTAGGATATGTGATCTCAAATCTCACTTTGGCTCTTCAAAGGATACTTTGCTGAATGACATAGTAGCAGAAGCTTTGTCGTATGCTGAGGCTAACAAAACGTGGAAATTCTGGCTTTGCTGCCGCTGTAGTGAGAAGTTTTCAGATTCAGAATCTCACATGCAGCATGTTGTGCAGGAACACCTGGGGAATCTCTTACCTAAAATGCAGAGACTTTTACCTCAAAATGTAGACAATGAATGGATTGAGATGATTCTTAGCTGTTCTTGGAAAGCTCTGGATGCCTCTGCTGCAGTCAAAATGCTTGAAAATCAAGCAAAATGCAAAGATTTTTCGTTTCCTGAGGATACCTATATTGATCATACTGAGGAGCACCATTATTGCTTTAAAGACGCTAATAATTCTTTACCTGAAAGGGGACATAGCCTTGCTACCTGTGCACCAAATATAAGTAATCATTGTAAATCTGAGGAAACTAATATTACAGAAGGTGTTGAAGTTGAACGGTCTGTAGCATATTCCCTTGCAGATGGTTGGCCATTGTCAGATGACTCTGAGCGTGCAAAACTTCTTGAGAAAATTCGTGCAGTTTTTGATATGCTTATTAGACACAAATGTCTTGCTGCTAGTCATCTTAGCAAGGTCATACAATTTGCCATGGATGAGATTCATGGACTTGCTGCTGGGTCTCAGCTTCTAAACCATGGTTTAGACCAGTCACCAACGTGCATATGCTTTTTAGGAGCCCATCAACTTAAGAAAATTCTCAAATTTTTGCAGGAACTATCACATACTTGTGGTTTGGGTAGATATGCTGATAAAAGTACTAGTCCCATGGATGATTTACACAATTCAAATCAAATTCCTGAGATTAAAGAGAAGATTGTTCTCAATGGAGATGCATCATGCCTTCTTCTAGATGAATGTTTAGTGCCTGCAGAAATCACTCCAGGTGCTACTAAGAGTGCTGCATTGGATGATGTAATTACCCCAACTTCTAATGACGTAGTTTTACATAACACCGGTCCTTTCCTATCTTGGATATTTTCAGGTTCATCTTGTGGAGATCAATTGACCTCATGGATGAGAACAAAAGAAGATAAAAGAAATCAAGGAATGGAACTTCTCCAGACTCTTGAGAAGGAGTTTTATCACCTACAGAGCCTCTCTGAGAAGAAATGTGAGCGCTTGAATTATGAGGAAGCACTGCAGGTAGTAGAGGACCTTTGTCTAGAAGAAGGTAAGAAGAGGGAAAATTTCACTGAATTTGTTCAGCAAAACTATGGATCTGTTCTCAGAAACCGGAGAGAAGAGCTCATTGAGAGTGAGAATGATGTCATGTATGTTAGCAATAGATTTGAGTTGGATGCTATAACAAATGTACTGCAAGAAGCAGAGGCAATGAATGTTAATCAATTTGGTTATGGGGAAAATTATACTGGTGGATGTGACGTGGAATCAGGTGAAGATGATGAATGGAGAACAAAACAAATGGATAGCTACATAGAAATAGCCATTCAGAAACTGAAGGAAAACCTATCTGTGGAGCTTAGCAAAATTGATGGACGGATCATGAGAAATGTTACAGAGATGCAGCAGTTGGAGCTCAAGCTTGAGCCTGTTTCTGCTTTTGATTATCGTGCAATATTACTGCCTCTAGTGAAGTCATACCTAAGGGCACGTTTGGAAGATTTGGCTGAGAAGGATGCGACGGAGAAGTCTGATGCTGCAAGGGAAGCATTTTTGGCCGAGCTTGCTCTTGATTCAAAGAAGGGTGTCAAGGGGGGAAGTGATGGTGCAAAACATATGGAGAAAACGAAAGATAAGAAAAAAAATAAAGAGAACAGGAAAACAAGGGATTTGAAGGCTACATATGGTCATGAGCAGCTCATTCTGGACACTGCTACTCCCGATGCTGACTTGGAACAACTGGAAGAGGAAGTGAGACGTAAAATTGAGTTAGAAGAAGAGGAAAAAAAACTTGAAGAAACTTTGGAGTTACAACGACGAATAGAAAATGAGGCTAAACTGAAGCACCTCGCTGAGCAGCAAAAGAAATCTTCTGTGACGTATTTGGAGAAGTCAGCTGACAAATTTCTGGATTGTCAGTTAAGGGCTGTTGCTGATGGTCCAGAAGTTCATGAACATATGAGACCGCCTATGCTGGAGCAGTTGCCAAATATTAATGGTTACCCTAGCAATTCAGATGGTGTGCATATTGCCACATCAAATGGTTCTGCGGTACCAGACATATCTTTACTCGATTCAGTTAATCAAACTATTCATCATAAGCATCCAACAAATATCAAACAAGCAGATCTGTCTTGCAAAATAGCTCCTGAAAATGATTTTCAGCTGGCTGAGCAGCGGACAGGTAAAAAGGGTAAACGGCATAAAAATTCTTCCAGATTGGTTGTTGGAAAGTTTGAGGCTGTCTCATTGGATAAAGAGAACACTGATGCATATACCGACAATCAGTCAAGAGAGCAGGTTAAATTCCACAACAATCAGGATGCTAACAACGGTTAG 3612 0.4288 MGHKKRNPAPRSKQSAAASPVTQSAIGGAANGPASAESELCRSSNHTIQSTSKIELPPHPEPSAYSTIKLECERALNALRRGNHTKALRLMKELCSRHESSAYSALIHRVQGTICVKVASIIDDPSAKQRHLKHAIESARKAAEQSPSSIEFAHFYANLLYEAANDSTEYEQVVKECEKALGISNPIDPAKESLQDESQQKISTADARIVHVQNELRQLIQKSNIASLSTWMKNLGNGEEKFRLIPIRRATEDPMEVRLVQARRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQSQNEGDRDDRTLDSSSGSGQRISERRKYGHVRKAGSTSERRDWVRLYWNSMSIDLKKEFLRIRICDLKSHFGSSKDTLLNDIVAEALSYAEANKTWKFWLCCRCSEKFSDSESHMQHVVQEHLGNLLPKMQRLLPQNVDNEWIEMILSCSWKALDASAAVKMLENQAKCKDFSFPEDTYIDHTEEHHYCFKDANNSLPERGHSLATCAPNISNHCKSEETNITEGVEVERSVAYSLADGWPLSDDSERAKLLEKIRAVFDMLIRHKCLAASHLSKVIQFAMDEIHGLAAGSQLLNHGLDQSPTCICFLGAHQLKKILKFLQELSHTCGLGRYADKSTSPMDDLHNSNQIPEIKEKIVLNGDASCLLLDECLVPAEITPGATKSAALDDVITPTSNDVVLHNTGPFLSWIFSGSSCGDQLTSWMRTKEDKRNQGMELLQTLEKEFYHLQSLSEKKCERLNYEEALQVVEDLCLEEGKKRENFTEFVQQNYGSVLRNRREELIESENDVMYVSNRFELDAITNVLQEAEAMNVNQFGYGENYTGGCDVESGEDDEWRTKQMDSYIEIAIQKLKENLSVELSKIDGRIMRNVTEMQQLELKLEPVSAFDYRAILLPLVKSYLRARLEDLAEKDATEKSDAAREAFLAELALDSKKGVKGGSDGAKHMEKTKDKKKNKENRKTRDLKATYGHEQLILDTATPDADLEQLEEEVRRKIELEEEEKKLEETLELQRRIENEAKLKHLAEQQKKSSVTYLEKSADKFLDCQLRAVADGPEVHEHMRPPMLEQLPNINGYPSNSDGVHIATSNGSAVPDISLLDSVNQTIHHKHPTNIKQADLSCKIAPENDFQLAEQRTGKKGKRHKNSSRLVVGKFEAVSLDKENTDAYTDNQSREQVKFHNNQDANNG 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci396g0006 1203 MobiDBLite consensus disorder prediction 37 56 - -
Prci396g0006 1203 MobiDBLite consensus disorder prediction 955 982 - -
Prci396g0006 1203 Coils Coil 202 222 - -
Prci396g0006 1203 MobiDBLite consensus disorder prediction 291 333 - -
Prci396g0006 1203 MobiDBLite consensus disorder prediction 1178 1203 - -
Prci396g0006 1203 MobiDBLite consensus disorder prediction 12 29 - -
Prci396g0006 1203 Pfam Protein of unknown function (DUF627) 74 184 IPR006866 -
Prci396g0006 1203 Pfam Protein of unknown function (DUF629) 344 868 IPR006865 -
Prci396g0006 1203 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1117 - -
Prci396g0006 1203 MobiDBLite consensus disorder prediction 953 982 - -
Prci396g0006 1203 ProSitePatterns Zinc finger C2H2 type domain signature. 401 422 IPR013087 -
Prci396g0006 1203 Coils Coil 723 743 - -
Prci396g0006 1203 Coils Coil 999 1035 - -
Prci396g0006 1203 MobiDBLite consensus disorder prediction 1185 1203 - -
Prci396g0006 1203 MobiDBLite consensus disorder prediction 1 62 - -
Prci396g0006 1203 Gene3D Tetratricopeptide repeat domain 37 297 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci396g0006 60 1200 C2H2 Transcription Factor Family AT3G47890 53.788 0.0 1119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci396g0006 - - pcin:129296941 2317.73