Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci391g0003 ATGGATCCCTCTGAATCCGATTCAACAGCTGTTTCGAACTCCATCAAAGATCCAGAACTGGGAAATCAGTCAGCTTCTTCCCTCTCTAGTTCCCATCACGATCCTGAAACGTCAGATCTCAATCCCAGGGATGAGACTGATGCCCTTCAGGAAGACCTTCAGGATAAGTTGGATTTGAAGGATAAGGATGAAGGGGACGAAGAGGAAAAGGGGAAGAAAGATTCTGAATTTGATGATGGTAAAGAAGTAAGTGGTATAGCTGGTACTGGAGAATCTGAGAAGGAACAAGTTTTCAATGAACATAACCAGAATTGGAATGGAAATGAGGACGATGGTTGGGGGGAGAATGTGAACGAGAGTGAGAATGATAATTTTGGTTTGGATAATGTAACTGTCGGTGATAAGGTGGAGAAGAACGATGGGGAAAGCAGCAGTAGAGCACACCAGTACCCGGTGAGGCCCGAAGCTGAAGATTGTGCGTTTTATCTCAAGACTGGAACTTGCAAATTTGGGTTTAACTGCAAGTTTAATCACCCTCTTAGGAAGAAAATCAAGGTTGTTAAGGAGAAGGGAAAAGAAAGAGAAGAATCAGGAGAAAGATCAGGGCAGACTGAATGCAAGTATTATCTAAAGTCAGGAGGTTGTAAATACGGAAAGGCTTGTAAATTTAACCACACCAGAGGAAAATGTTCTCCAACCACTATTTTAGAACTTAACTTTCTCGGCCTGCCTATTCGTCTGGGGGAGAAAGAGTGCCCCTATTATATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAATTCAATCACCCTGATCCTACTACTGTTGGAGGAAGTGATCCTCCTTCAACATTTGCTAATGGTGGGGCTGTTTCTTTACAAGGTGTATCTCAGCCATCTATACCCTCTTGGTCTTCTCCAAGAACATTCAATGAAACTGCCCCGTTTGTGCCAATGATGATTCCACCTGTTCAAGGGGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCTGTCTACCTACCTGAGAGGACTATGCACCCACCATCTCCATACATTGTGAACAGCCCAGCTATTGAAACAAATGTCTTTATGCATCATCCGAAGCAGATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCAGAGTGCAGTTACTACTTAAAAACTGGCCATTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAAGAACCGCAGTACAAGACCTCTATGCACTCTAAGTGACAAGGGTCTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGCTATGGAATATGCAAATATGGGCCGTCTTGTAAGTTTGACCACCCAACAAACCTATCGCCGTCAAACATGGCTGGACTGGATCAGGAATCCTCCTGCACAGACTTTGCTAGTGTGGAAGTAGCTGAGATGGCTGGAAGTAGAGGTGCAGGTGACTCCGCAGTTAAGCAACCTGTGTAA 1491 0.4433 MDPSESDSTAVSNSIKDPELGNQSASSLSSSHHDPETSDLNPRDETDALQEDLQDKLDLKDKDEGDEEEKGKKDSEFDDGKEVSGIAGTGESEKEQVFNEHNQNWNGNEDDGWGENVNESENDNFGLDNVTVGDKVEKNDGESSSRAHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPLRKKIKVVKEKGKEREESGERSGQTECKYYLKSGGCKYGKACKFNHTRGKCSPTTILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTTVGGSDPPSTFANGGAVSLQGVSQPSIPSWSSPRTFNETAPFVPMMIPPVQGVSPQSSDWNGYQAPVYLPERTMHPPSPYIVNSPAIETNVFMHHPKQMQVEEFPERPGEPECSYYLKTGHCKFKSNCKFHHPKNRSTRPLCTLSDKGLPLRPDQSVCSHYSRYGICKYGPSCKFDHPTNLSPSNMAGLDQESSCTDFASVEVAEMAGSRGAGDSAVKQPV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci391g0003 496 PANTHER PROTEIN PHOSPHATASE RELATED 6 459 - -
Prci391g0003 496 MobiDBLite consensus disorder prediction 36 81 - -
Prci391g0003 496 ProSiteProfiles Zinc finger C3H1-type profile. 246 274 IPR000571 GO:0046872
Prci391g0003 496 MobiDBLite consensus disorder prediction 1 150 - -
Prci391g0003 496 ProSiteProfiles Zinc finger C3H1-type profile. 382 410 IPR000571 GO:0046872
Prci391g0003 496 ProSiteProfiles Zinc finger C3H1-type profile. 200 228 IPR000571 GO:0046872
Prci391g0003 496 SUPERFAMILY CCCH zinc finger 152 181 IPR036855 GO:0046872
Prci391g0003 496 Gene3D - 116 189 - -
Prci391g0003 496 Gene3D - 366 421 - -
Prci391g0003 496 Gene3D - 427 479 - -
Prci391g0003 496 ProSiteProfiles Zinc finger C3H1-type profile. 427 455 IPR000571 GO:0046872
Prci391g0003 496 SMART c3hfinal6 427 454 IPR000571 GO:0046872
Prci391g0003 496 SMART c3hfinal6 200 227 IPR000571 GO:0046872
Prci391g0003 496 SMART c3hfinal6 382 409 IPR000571 GO:0046872
Prci391g0003 496 SMART c3hfinal6 246 273 IPR000571 GO:0046872
Prci391g0003 496 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Prci391g0003 496 SUPERFAMILY CCCH zinc finger 425 453 IPR036855 GO:0046872
Prci391g0003 496 SUPERFAMILY CCCH zinc finger 387 410 IPR036855 GO:0046872
Prci391g0003 496 SUPERFAMILY CCCH zinc finger 247 273 IPR036855 GO:0046872
Prci391g0003 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 249 272 IPR000571 GO:0046872
Prci391g0003 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 225 IPR000571 GO:0046872
Prci391g0003 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 429 453 IPR000571 GO:0046872
Prci391g0003 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 384 409 IPR000571 GO:0046872
Prci391g0003 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 179 IPR000571 GO:0046872
Prci391g0003 496 SUPERFAMILY CCCH zinc finger 204 229 IPR036855 GO:0046872
Prci391g0003 496 Gene3D - 190 277 - -
Prci391g0003 496 MobiDBLite consensus disorder prediction 99 127 - -
Prci391g0003 496 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Prci391g0003 496 MobiDBLite consensus disorder prediction 1 35 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci391g0003 345 461 C2H2 Transcription Factor Family AT3G02830 39.062 1.85e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci391g0003 zf-CCCH 3.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci391g0003 - - gmx:100786894 586.26