Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci391g0002 | ATGGATCCCTCTGAATCCGATTCAACAGCTGTTTCGAACTCCATCAAAGATCCAGAACTGGGAAATCAGTCAGCTTCTTCCCTCTCTAGTTCCCATCACGATCCTGAAACGTCAGATCTCAATCCCAGGGATGAGACTGATGCCCTTCAGGAAGACCTTCAGGATAAGTTGGATTTGAAGGATAAGGATGAAGGGGACGAAGAGGAAAAGGGGAAGAAAGATTCTGAATTTGATGATGGTAAAGAAGTAAGTGGTATAGCTGGTACTGGAGAATCTGAGAAGGAACAAGTTTTCAATGAACATAACCAGAATTGGAATGGAAATGAGGACGATGGTTGGGGGGAGAATGTGAACGAGAGTGAGAATGATAATTTTGGTTTGGATAATGTAACTGTCGGTGATAAGGTGGAGAAGAACGATGGGGAAAGCAGCAGTAGAGCACACCAGTACCCGGTGAGGCCCGAAGCTGAAGATTGTGCGTTTTATCTCAAGACTGGAACTTGCAAATTTGGGTTTAACTGCAAGTTTAATCACCCTCTTAGGAAGAAAATCAAGGTTGTTAAGGAGAAGGGAAAAGAAAGAGAAGAATCAGGAGAAAGATCAGGGCAGACTGAATGCAAGTATTATCTAAAGTCAGGAGGTTGTAAATACGGAAAGGCTTGTAAATTTAACCACACCAGAGGAAAATGTTCTCCAACCACTATTTTAGAACTTAACTTTCTCGGCCTGCCTATTCGTCTGGGGGAGAAAGAGTGCCCCTATTATATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAATTCAATCACCCTGATCCTACTACTGTTGGAGGAAGTGATCCTCCTTCAACATTTGCTAATGGTGGGGCTGTTTCTTTACAAGGTGTATCTCAGCCATCTATACCCTCTTGGTCTTCTCCAAGAACATTCAATGAAACTGCCCCGTTTGTGCCAATGATGATTCCACCTGTTCAAGGGGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCTGTCTACCTACCTGAGAGGACTATGCACCCACCATCTCCATACATTGTGAACAGCCCAGCTATTGAAACAAATGTCTTTATGCATCATCCGAAGCAGATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCAGAGTGCAGTTACTACTTAAAAACTGGCCATTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAAGAACCGCAGTACAAGACCTCTATGCACTCTAAGTGACAAGGGTCTGCCTTTGAGACCTCAGGACCAGAGTGTCTGCTCGCACTATAGTCGCTATGGAATATGCAAATATGGGCCGTCTTGTAAGTTTGACCACCCAACAAACCTATCGCCGTCAAACATGGCTGGACTGGATCAGGAATCCTCCTGCACAGACTTTGCTAGTGTGGAAGTAGCTGAGATGGCTGGAAGTAGAGGTGCAGGTGACTCCGCAGTTAAGCAACCTGTGTAA | 1494 | 0.4438 | MDPSESDSTAVSNSIKDPELGNQSASSLSSSHHDPETSDLNPRDETDALQEDLQDKLDLKDKDEGDEEEKGKKDSEFDDGKEVSGIAGTGESEKEQVFNEHNQNWNGNEDDGWGENVNESENDNFGLDNVTVGDKVEKNDGESSSRAHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPLRKKIKVVKEKGKEREESGERSGQTECKYYLKSGGCKYGKACKFNHTRGKCSPTTILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTTVGGSDPPSTFANGGAVSLQGVSQPSIPSWSSPRTFNETAPFVPMMIPPVQGVSPQSSDWNGYQAPVYLPERTMHPPSPYIVNSPAIETNVFMHHPKQMQVEEFPERPGEPECSYYLKTGHCKFKSNCKFHHPKNRSTRPLCTLSDKGLPLRPQDQSVCSHYSRYGICKYGPSCKFDHPTNLSPSNMAGLDQESSCTDFASVEVAEMAGSRGAGDSAVKQPV | 497 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci391g0002 | 497 | Gene3D | - | 116 | 189 | - | - | |
| Prci391g0002 | 497 | MobiDBLite | consensus disorder prediction | 36 | 81 | - | - | |
| Prci391g0002 | 497 | ProSiteProfiles | Zinc finger C3H1-type profile. | 246 | 274 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | MobiDBLite | consensus disorder prediction | 1 | 150 | - | - | |
| Prci391g0002 | 497 | SUPERFAMILY | CCCH zinc finger | 429 | 454 | IPR036855 | GO:0046872 | |
| Prci391g0002 | 497 | ProSiteProfiles | Zinc finger C3H1-type profile. | 382 | 410 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | ProSiteProfiles | Zinc finger C3H1-type profile. | 200 | 228 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | SUPERFAMILY | CCCH zinc finger | 152 | 181 | IPR036855 | GO:0046872 | |
| Prci391g0002 | 497 | ProSiteProfiles | Zinc finger C3H1-type profile. | 428 | 456 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | Gene3D | - | 190 | 277 | - | - | |
| Prci391g0002 | 497 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 249 | 272 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 203 | 225 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 384 | 409 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 430 | 454 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 157 | 179 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | Gene3D | - | 366 | 421 | - | - | |
| Prci391g0002 | 497 | Gene3D | - | 427 | 480 | - | - | |
| Prci391g0002 | 497 | SMART | c3hfinal6 | 200 | 227 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | SMART | c3hfinal6 | 429 | 455 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | SMART | c3hfinal6 | 382 | 409 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | SMART | c3hfinal6 | 246 | 273 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | SMART | c3hfinal6 | 153 | 180 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | SUPERFAMILY | CCCH zinc finger | 247 | 273 | IPR036855 | GO:0046872 | |
| Prci391g0002 | 497 | SUPERFAMILY | CCCH zinc finger | 204 | 229 | IPR036855 | GO:0046872 | |
| Prci391g0002 | 497 | PANTHER | PROTEIN PHOSPHATASE RELATED | 6 | 460 | - | - | |
| Prci391g0002 | 497 | MobiDBLite | consensus disorder prediction | 99 | 127 | - | - | |
| Prci391g0002 | 497 | ProSiteProfiles | Zinc finger C3H1-type profile. | 153 | 181 | IPR000571 | GO:0046872 | |
| Prci391g0002 | 497 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Prci391g0002 | 497 | SUPERFAMILY | CCCH zinc finger | 387 | 410 | IPR036855 | GO:0046872 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci391g0002 | 345 | 462 | C2H2 Transcription Factor Family | AT3G02830 | 38.760 | 3.89e-19 | 87.4 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Prci391g0002 | zf-CCCH | 4.2e-09 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci391g0002 | - | - | gmx:100786894 | 581.637 |