Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci391g0001 ATGGATCCCTCTGAATCCGATTCAACAGCTGTTTCGAACTCCATCAAAGATCCAGAACTGGGAAATCAGTCAGCTTCTTCCCTCTCTAGTTCCCATCACGATCCTGAAACGTCAGATCTCAATCCCAGGGATGAGACTGATGCCCTTCAGGAAGACCTTCAGGATAAGTTGGATTTGAAGGATAAGGATGAAGGGGACGAAGAGGAAAAGGGGAAGAAAGATTCTGAATTTGATGATGGTAAAGAAGTAAGTGGTATAGCTGGTACTGGAGAATCTGAGAAGGAACAAGTTTTCAATGAACATAACCAGAATTGGAATGGAAATGAGGACGATGGTTGGGGGGAGAATGTGAACGAGAGTGAGAATGATAATTTTGGTTTGGATAATGTAACTGTCGGTGATAAGGTGGAGAAGAACGATGGGGAAAGCAGCAGTAGAGCACACCAGTACCCGGTGAGGCCCGAAGCTGAAGATTGTGCGTTTTATCTCAAGACTGGAACTTGCAAATTTGGGTTTAACTGCAAGTTTAATCACCCTCTTAGGAAGAAAATCAAGGTTGTTAAGGAGAAGGGAAAAGAAAGAGAAGAATCAGGAGAAAGATCAGGGCAGACTGAATGCAAGGGGGAGAAAGAGTGCCCCTATTATATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAATTCAATCACCCTGATCCTACTACTGTTGGAGGAAGTGATCCTCCTTCAACATTTGCTAATGGTGGGGCTGTTTCTTTACAAGGTGTATCTCAGCCATCTATACCCTCTTGGTCTTCTCCAAGAACATTCAATGAAACTGCCCCGTTTGTGCCAATGATGATTCCACCTGTTCAAGGGGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCTGTCTACCTACCTGAGAGGACTATGCACCCACCATCTCCATACATTGTGAACAGCCCAGCTATTGAAACAAATGTCTTTATGCATCATCCGAAGCAGATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCAGAGTGCAGTTACTACTTAAAAACTGGCCATTGCAAATTTAAATCTAATTGTAAATTTCACCATCCAAAGAACCGCAGTACAAGACCTCTATGCACTCTAAGTGACAAGGGTCTGCCTTTGAGACCTCAGGACCAGAGTGTCTGCTCGCACTATAGTCGCTATGGAATATGCAAATATGGGCCGTCTTGTAAGTTTGACCACCCAACAAACCTATCGCCGTCAAACATGGCTGGACTGGATCAGGAATCCTCCTGCACAGACTTTGCTAGTGTGGAAGTAGCTGAGATGGCTGGAAGTAGAGGTGCAGGTGACTCCGCAGTTAAGCAACCTGTGTAA 1374 0.4491 MDPSESDSTAVSNSIKDPELGNQSASSLSSSHHDPETSDLNPRDETDALQEDLQDKLDLKDKDEGDEEEKGKKDSEFDDGKEVSGIAGTGESEKEQVFNEHNQNWNGNEDDGWGENVNESENDNFGLDNVTVGDKVEKNDGESSSRAHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPLRKKIKVVKEKGKEREESGERSGQTECKGEKECPYYMRTGSCKFGANCKFNHPDPTTVGGSDPPSTFANGGAVSLQGVSQPSIPSWSSPRTFNETAPFVPMMIPPVQGVSPQSSDWNGYQAPVYLPERTMHPPSPYIVNSPAIETNVFMHHPKQMQVEEFPERPGEPECSYYLKTGHCKFKSNCKFHHPKNRSTRPLCTLSDKGLPLRPQDQSVCSHYSRYGICKYGPSCKFDHPTNLSPSNMAGLDQESSCTDFASVEVAEMAGSRGAGDSAVKQPV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci391g0001 457 MobiDBLite consensus disorder prediction 36 81 - -
Prci391g0001 457 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Prci391g0001 457 SMART c3hfinal6 208 233 IPR000571 GO:0046872
Prci391g0001 457 SMART c3hfinal6 389 415 IPR000571 GO:0046872
Prci391g0001 457 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Prci391g0001 457 MobiDBLite consensus disorder prediction 1 150 - -
Prci391g0001 457 Gene3D - 387 440 - -
Prci391g0001 457 Gene3D - 326 381 - -
Prci391g0001 457 SUPERFAMILY CCCH zinc finger 209 233 IPR036855 GO:0046872
Prci391g0001 457 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Prci391g0001 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 232 IPR000571 GO:0046872
Prci391g0001 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 179 IPR000571 GO:0046872
Prci391g0001 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 369 IPR000571 GO:0046872
Prci391g0001 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 390 414 IPR000571 GO:0046872
Prci391g0001 457 Gene3D - 189 239 - -
Prci391g0001 457 Gene3D - 116 188 - -
Prci391g0001 457 SUPERFAMILY CCCH zinc finger 152 181 IPR036855 GO:0046872
Prci391g0001 457 ProSiteProfiles Zinc finger C3H1-type profile. 207 234 IPR000571 GO:0046872
Prci391g0001 457 SUPERFAMILY CCCH zinc finger 389 414 IPR036855 GO:0046872
Prci391g0001 457 SUPERFAMILY CCCH zinc finger 347 370 IPR036855 GO:0046872
Prci391g0001 457 PANTHER PROTEIN PHOSPHATASE RELATED 6 207 - -
Prci391g0001 457 MobiDBLite consensus disorder prediction 99 127 - -
Prci391g0001 457 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Prci391g0001 457 ProSiteProfiles Zinc finger C3H1-type profile. 388 416 IPR000571 GO:0046872
Prci391g0001 457 MobiDBLite consensus disorder prediction 1 35 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci391g0001 305 422 C2H2 Transcription Factor Family AT3G02830 38.760 1.84e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci391g0001 zf-CCCH 3.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci391g0001 - - qsa:O6P43_030782 453.751