Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci390g0004 ATGTTAATGGAAGTGCCGGAGTACTTTGTCGGTGGCTATTTCTCTGCCGGAGGAGATCAATTCTCGCCGGAGAAGCGCCATGGTGCTGACCAGAAGCCTGGTGAGCCCTTCGCCATTGACGACCTCCTTGACTTCTCCAACGCCGACGCTATGATCATGTCCGACGGTTTCTTCGACAATGCCGCCGGCAACTCCACTGTCACCGCCGTTGACAGCTGTAATTCGTCCGTTTCGGGCGGTGACAATCATTTCTCCTCTGGCAACGCTGGCTCCCGCGGCTCTGGCGATCCTCAATTATCCGGAGAACTCTGCGTTCCGCAGTACGACGACTTGGCTGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCATTCTCGGTCGAAGATGAGCTACAAACACTCCACCTCATCTCCGGCACCACTTCTTCCGCCATCGGCACGAAGCCTCAGACACCAGAGTCCTCCTCTTCCTCCGAAACACTTCAACACTTCGCCGCTGACACCGCTCGAAACGCACCGCTTTTCCATCCAGAAACTCCGCTTCCGGGTAAAGCTCGCAGCAAGCGTACAAGAGCTGCCCCCGGGGATTGGTCTACTCGCTTCCTCCACCTGATCACCCCAACGGTCGTGCCGGAACCGGCTCAAGCGAAGGCGGCGGCAAAGAAAAGAGAGAGTTCGAATTCGGAGTACTCTTCGGGTAGGAAATGCCTGCATTGCGCCGCCGACAAGACTCCACAATGGCGGACGGGACCAATGGGCCCGAAGACGCTGTGTAATGCTTGCGGAGTGCGTTACAAGTCCGGAAGGCTGGTGCCGGAGTACCGACCGGCTGCGAGCCCGACTTTTGTGTTGTCAAAGCACTCTAATTCGCACAGGAAGGTGATGGAGCTGAGGAGGCAGAAGGAAATGCAGAGGCAGCAACATCAACAATTGGTTAGCCACAATTCAATTTTCGGCGTTTCTCACGGGGAGATGAGTTCCTGA 984 0.56 MLMEVPEYFVGGYFSAGGDQFSPEKRHGADQKPGEPFAIDDLLDFSNADAMIMSDGFFDNAAGNSTVTAVDSCNSSVSGGDNHFSSGNAGSRGSGDPQLSGELCVPQYDDLAELEWLSNFVEDSFSVEDELQTLHLISGTTSSAIGTKPQTPESSSSSETLQHFAADTARNAPLFHPETPLPGKARSKRTRAAPGDWSTRFLHLITPTVVPEPAQAKAAAKKRESSNSEYSSGRKCLHCAADKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLSKHSNSHRKVMELRRQKEMQRQQHQQLVSHNSIFGVSHGEMSS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci390g0004 327 MobiDBLite consensus disorder prediction 142 161 - -
Prci390g0004 327 CDD ZnF_GATA 235 282 IPR000679 GO:0006355|GO:0043565
Prci390g0004 327 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Prci390g0004 327 MobiDBLite consensus disorder prediction 78 95 - -
Prci390g0004 327 PANTHER GATA TRANSCRIPTION FACTOR 31 309 - -
Prci390g0004 327 SMART GATA_3 230 280 IPR000679 GO:0006355|GO:0043565
Prci390g0004 327 FunFam GATA transcription factor 225 311 - -
Prci390g0004 327 Pfam GATA zinc finger 236 269 IPR000679 GO:0006355|GO:0043565
Prci390g0004 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 294 - -
Prci390g0004 327 PIRSF Txn_fac_GATA_plant 23 322 IPR016679 GO:0003677|GO:0005634|GO:0045893
Prci390g0004 327 Gene3D - 231 314 IPR013088 GO:0006355|GO:0008270
Prci390g0004 327 MobiDBLite consensus disorder prediction 169 194 - -
Prci390g0004 327 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Prci390g0004 327 MobiDBLite consensus disorder prediction 78 98 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci390g0004 35 324 C2C2-Gata Transcription Factor Family AT4G32890 47.039 3.14e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci390g0004 GATA 7.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci390g0004 - - gmx:100776605 439.884