Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci388g0008 | ATGACTATGTCGTTTGTTCCGATATCCCCAAATAAACGACTCAAAACCCAAGGCCAGGAGGACTCCGATCATGAACTCCACCCGCCACCTTCCTTCGAGGATAACCAACCTGATTCTTGTGGAATTTGCTACGCCGACCATGGCACTTCAATCAGAGGTCAAATTGATTGTTGCAATCACTTTTTTTGCTTCGTCTGCATCATGGAATGGTCCAAGCACGAGTCTCGATGCCCCCTCTGTCGACAAAGATTCTCCACCGTTCGCCGCCCACCTAAGCCCGGCGTCTTCCCTTCCTCGCGCCTCGTTAAAGTCCCTATTCGCGACCAGGTTTACCATGTTCATGGAAATATCACAACAGGTCCCGCGGATCCTTATGCCGAAACTCGGTGTAGTGTCTGTAATGGTAGGGAAGATGAAAGTTTTCTTCTCCTATGTGATCTATGTGATACTGCTTCTCATACATACTGTGTTGGCCTTGGACATGTTGTGCCTGAAGGTGATTGGTTTTGCCATGATTGTATTGTTTCCAAGGCGATTAATGGCGATAATGATGTAGATCATCAATGTGATACGCCGACAGCTGAGCCAAGTGTAAAAATCCTTGATATTGTGAAAGAACCAATCAGCCAGATGGTCCGAAGACCAAGATCATCGCCTCTTGTTACCCCTTTATCTGATAGGGTGAATAGAAAGAAAGATAGAAATCCTGACACAAGTGCTAGGACATTGGACCAATGTCGCAATGTGCAACGTAATATAAGAGCTTTGCGTGAAAATTGGAATGCTTTGAGAAATGGCTCATTAAGGTTTCCTTTCAATTCAACTGAATTTAGTGCTAGGCATGATCGAAAACAGGGCTCTGATTCCTTAGCTCATAGAAAATCAGATGAACCACATTCTTCGGCTTCCACAAGCCTTCATCAATCTACAATTCAAAGCATACCTTCTAGTAGCACATCGAATGAGAGAGGCTTGAAAGATGTTGACAAGGCTTGGAAAATGCTGGATAGAGCAAAGATGATGAAAAAGACTAAACAAAAAAGCAGCATTCTTCCACAGGGATTGGATCGTCTTTCAAGAGATGTAGGACATGGAAAAGCACAGAGCATTTATTGCAATGACCAAGAATTGAAGATTCAACAATCTAGAAGATCCTCAGGGAAGAAGAAGCAATACGGCTTTTCTAGTTTTAGTAAGGATATGGATAATCACCAGCCTCTAGAGTTGGGACATCAAAAGCATAGGGTTGCACATAAGGAGTCTTCACCGAATATTTGGGACCAAGCTTCTCATTTAGAAGGATGCTATGAACCTTCATTGCCCAGAAAAGTGCAAAGTAGCATTCAAGGTGCTCCCCCTCATGAAAATGGGAAGAGAAATTTCACCAAGGAACAAAGAAGGTCTTCTTGTTTAGTAACTTCGGCAGGTTCTGCTCCTTGTGATGGCAAGAGTGGTAGAGTGTCTTCCTCAAGCAGGGAGGCGGGTAAAAGAAAGTGGTTGTCTAAAAGTTTCAGGGATACAAACACAAGAGATAGTGAAGATTCTAAGAACGAGATCAAGTCTCTTGTCAAGCTCAATCTGAAGGTCCTTAGTAAAGATAAACCGTTAGGTGTTGATGTATTCAAGGAAATTGCTAGGCAGTCAACACACGCTATATTGGCTGTATGTCGATCGGAGCATGAAAAGCCGAGCACAAGCTCCTCAAACTCTGTATGCAGTCACGAGGGCGAGAATCAGCATTTTCCCAAGTCCACCTTGATGCCCAATTGTTGCCGACAATGTTTTTACACGTTTGTGAAGAATGTGGTCAACTCCACTATGATGGAGAAGCTGGGTGGTGGTGGGTAG | 1848 | 0.4383 | MTMSFVPISPNKRLKTQGQEDSDHELHPPPSFEDNQPDSCGICYADHGTSIRGQIDCCNHFFCFVCIMEWSKHESRCPLCRQRFSTVRRPPKPGVFPSSRLVKVPIRDQVYHVHGNITTGPADPYAETRCSVCNGREDESFLLLCDLCDTASHTYCVGLGHVVPEGDWFCHDCIVSKAINGDNDVDHQCDTPTAEPSVKILDIVKEPISQMVRRPRSSPLVTPLSDRVNRKKDRNPDTSARTLDQCRNVQRNIRALRENWNALRNGSLRFPFNSTEFSARHDRKQGSDSLAHRKSDEPHSSASTSLHQSTIQSIPSSSTSNERGLKDVDKAWKMLDRAKMMKKTKQKSSILPQGLDRLSRDVGHGKAQSIYCNDQELKIQQSRRSSGKKKQYGFSSFSKDMDNHQPLELGHQKHRVAHKESSPNIWDQASHLEGCYEPSLPRKVQSSIQGAPPHENGKRNFTKEQRRSSCLVTSAGSAPCDGKSGRVSSSSREAGKRKWLSKSFRDTNTRDSEDSKNEIKSLVKLNLKVLSKDKPLGVDVFKEIARQSTHAILAVCRSEHEKPSTSSSNSVCSHEGENQHFPKSTLMPNCCRQCFYTFVKNVVNSTMMEKLGGGG | 615 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci388g0008 | 615 | CDD | RING-HC_Topors | 37 | 84 | - | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Prci388g0008 | 615 | Pfam | PHD-finger | 129 | 174 | IPR019787 | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Prci388g0008 | 615 | SUPERFAMILY | RING/U-box | 39 | 95 | - | - | |
| Prci388g0008 | 615 | Coils | Coil | 239 | 259 | - | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 16 | 31 | - | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 212 | 243 | - | - | |
| Prci388g0008 | 615 | SMART | ring_2 | 40 | 80 | IPR001841 | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 278 | 325 | - | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 378 | 405 | - | - | |
| Prci388g0008 | 615 | ProSiteProfiles | Zinc finger PHD-type profile. | 127 | 176 | IPR019787 | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 301 | 322 | - | - | |
| Prci388g0008 | 615 | SUPERFAMILY | FYVE/PHD zinc finger | 121 | 177 | IPR011011 | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 490 | 517 | - | - | |
| Prci388g0008 | 615 | Pfam | Ring finger domain | 38 | 81 | IPR001841 | - | |
| Prci388g0008 | 615 | SMART | PHD_3 | 129 | 174 | IPR001965 | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 226 | 240 | - | - | |
| Prci388g0008 | 615 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 89 | IPR013083 | - | |
| Prci388g0008 | 615 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 179 | IPR013083 | - | |
| Prci388g0008 | 615 | ProSiteProfiles | Zinc finger RING-type profile. | 40 | 81 | IPR001841 | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 278 | 300 | - | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 440 | 517 | - | - | |
| Prci388g0008 | 615 | ProSitePatterns | Zinc finger RING-type signature. | 58 | 67 | IPR017907 | - | |
| Prci388g0008 | 615 | MobiDBLite | consensus disorder prediction | 378 | 402 | - | - | |
| Prci388g0008 | 615 | PANTHER | F18C1.6 PROTEIN | 25 | 610 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci388g0008 | 106 | 177 | C2H2 Transcription Factor Family | AT3G01460 | 31.507 | 6.91e-10 | 60.5 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Prci388g0008 | PHD | 1.3e-09 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci388g0008 | - | - | pcin:129296896 | 1258.05 |