Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci385g0004 ATGTCTTCTGTAATAGGCGTTTCGTCTATATACCAGACTCCGTCTCTGGAGCTATATAAAAGAGCTACAACAACAACGGGTGCTACCACCTCCCTTTCGTTCCAATGTTCTGACAACAAGTCCCACTTTAACAACGTTCTGAGAGCTCACCTCAGTAACAATGGTAGCGGAAATTTCAAGAGTGGGGCTAAACCTAGAGGTAGCTTTGTTCCTTCTTCGATTGCCACGCCCAATTCTTCCGTTCTGAGCGAAGAAGCGTTCAAGGGCCTAGGTCGGGGTTTTTCCGACAAAGAAACTCTGGATGATGCTACTGAAAACGATGACTATGGCTATGACTCTGAAACCGAGGCTTCTTCAGATGTTGGCAACGAGGAGGAGCTCGACATTTCCAAGCTGGGCTTGCCTTCGCGCCTTGTGGAATCACTCCAGCAACGTGGGATCAATCATCTTTTCCCCATTCAGAGAGCTGTTTTGGTGCCGGCCCTCCAAGGTCGAGATCTTATTGCCCGAGCGAAGACTGGGACTGGAAAGACACTAGCATTTGGGATTCCAATTATTAGAGGGCTCACTGACGATGAACAAAGAATCTCCCTGAGACGATCTGGTCGTCTGCCCAAAGTATTGGTCCTTGCACCCACCAGGGAGCTAGCAAAGCAAGTGGAGAAAGAGATAAAAGAATCTGCACCCTATTTGAGCACAGTTTGTGTTTATGGGGGCGTTTCTTATGTTACACAACAAAATGCACTTTCTCGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGACCTAATTAATGGGAACAGTCTTAAACTGAGTGAAGTGAAGTATTTGGTCCTTGATGAGGCCGATCAGATGCTTGCTGTTGGGTTCGAGGAGGATGTAGAAGTAATTTTAGAGAAATTACCATCTGAACGGCAGAGCATGCTTTTTTCTGCAACCATGCCTGGCTGGGTGAAGAAACTTGCCAAGAAATATTTACACGATCCGTTGACAATTGATTTGGTTGGTGAAGAAGAGGAAAAACTTGCGGAAGGGATCAAACTTTATGCAATATCAGCCACTGCTACTTCAAAGCGGACAATGCTTTCTGATCTCATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACCCAGACAAAAAGGGATGCTGATGAAGTATCATTGGCATTGACAAATAGCATACCTTCTGAGGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGCTTTCGGCAAGGGAAATTCACAGTTCTTGTTGCCACTGATGTGGCAGCACGTGGACTTGATATTCCTAATGTTGATCTGATTATTCACTATGAACTTCCGAATGACCCTGAGACGTTTGTACATCGCTCTGGTCGTACTGGGCGTGCTGGAAAGGAAGGTACTGCGCTTTTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCTCTTGAGCGTGATGTAGGCTGTAAATTCGAATTTATTACACCACCAGCTATAGGTGATGTTTTGGAATCATCAGCTGACCAAGTGGTTGCCACACTTAATAGAGTTCATCCTGAGTCCATTGAGTTTTTCACCCCAACTGCACAAAAATTGATTGAGGAACAAGGAACAAGTGCCCTTGCAGCTGCACTTGCACATCTGAGTGGATTTTCAAAACCTCCCTCATCACGATCTCTTATCAATCATGAGCAGGGATGGGTTACATTACAACTGACTCGAGATCAAGGAGATTCTAGAAGGTTTTTTTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTCTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATATAATTGCAGACGAAAGGGTTCAGGGGGCTGTATTCGATCTTCCAGAGGAGATTGCAAAGGAGTTACTGAATAAGGAAATACCACCTGGCAACACTATTTCTAAGATCACTAAGTTGCCTCCTTTGCAAGATGATGGGCCACCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGTAGAGGTTCTAGGGATCGGAGAGGTTTTAAAACCTCACGGAGAGAAGGGGGCTTTGATTCTGATGATGAATTTGGTGATTCATATAGAAGAGGCGGTCGAAGTTTTAGAACCAGCAATAGCTGGTCTCAAAAGTCAAGAAACAGTGGAAGCTTTGATGAATTGTTTGATTCAAATAGGAAAGGTGGTCGAAGTTATAGAAATGGCAATAGCTGGTCTCAAAAGGCAAGAAGCAACGAGGATGATTGGCTAATTGGAGGTAGAAGATCAAGCAGGTCTCCATCGTCAGACAGAGGCTTTGGAGGGGCTTGTTTTAACTGTGGGCAACCTGGACATCGTGCATCTGAATGTCCCAACAAACGAGGCTTCTAA 2388 0.4451 MSSVIGVSSIYQTPSLELYKRATTTTGATTSLSFQCSDNKSHFNNVLRAHLSNNGSGNFKSGAKPRGSFVPSSIATPNSSVLSEEAFKGLGRGFSDKETLDDATENDDYGYDSETEASSDVGNEEELDISKLGLPSRLVESLQQRGINHLFPIQRAVLVPALQGRDLIARAKTGTGKTLAFGIPIIRGLTDDEQRISLRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLKLSEVKYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLAKKYLHDPLTIDLVGEEEEKLAEGIKLYAISATATSKRTMLSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTALLMYTSSQRRTVRSLERDVGCKFEFITPPAIGDVLESSADQVVATLNRVHPESIEFFTPTAQKLIEEQGTSALAAALAHLSGFSKPPSSRSLINHEQGWVTLQLTRDQGDSRRFFSARSVTGFLSDVYSPAADEVGKIHIIADERVQGAVFDLPEEIAKELLNKEIPPGNTISKITKLPPLQDDGPPSDFYGKFSDRDRRGSRDRRGFKTSRREGGFDSDDEFGDSYRRGGRSFRTSNSWSQKSRNSGSFDELFDSNRKGGRSYRNGNSWSQKARSNEDDWLIGGRRSSRSPSSDRGFGGACFNCGQPGHRASECPNKRGF 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci385g0004 795 MobiDBLite consensus disorder prediction 93 124 - -
Prci385g0004 795 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 335 IPR014001 -
Prci385g0004 795 CDD GUCT_Hera 563 643 - -
Prci385g0004 795 MobiDBLite consensus disorder prediction 642 795 - -
Prci385g0004 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 490 IPR027417 -
Prci385g0004 795 MobiDBLite consensus disorder prediction 735 750 - -
Prci385g0004 795 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 112 738 - -
Prci385g0004 795 FunFam ATP-dependent RNA helicase RhlE 119 338 - -
Prci385g0004 795 Gene3D - 128 339 IPR027417 -
Prci385g0004 795 Pfam GUCT (NUC152) domain 556 656 IPR012562 GO:0003723|GO:0004386|GO:0005524
Prci385g0004 795 FunFam Nucleolar RNA helicase II 357 547 - -
Prci385g0004 795 Pfam Helicase conserved C-terminal domain 362 469 IPR001650 -
Prci385g0004 795 CDD SF2_C_DEAD 349 478 - -
Prci385g0004 795 Gene3D - 351 548 IPR027417 -
Prci385g0004 795 Gene3D - 759 794 - -
Prci385g0004 795 Pfam DEAD/DEAH box helicase 151 324 IPR011545 GO:0003676|GO:0005524
Prci385g0004 795 SMART ultradead3 146 352 IPR014001 -
Prci385g0004 795 SUPERFAMILY Retrovirus zinc finger-like domains 763 794 IPR036875 GO:0003676|GO:0008270
Prci385g0004 795 ProSiteProfiles Zinc finger CCHC-type profile. 776 791 IPR001878 GO:0003676|GO:0008270
Prci385g0004 795 MobiDBLite consensus disorder prediction 55 75 - -
Prci385g0004 795 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 509 IPR001650 -
Prci385g0004 795 SMART helicmild6 389 469 IPR001650 -
Prci385g0004 795 SMART c2hcfinal6 775 791 IPR001878 GO:0003676|GO:0008270
Prci385g0004 795 MobiDBLite consensus disorder prediction 664 703 - -
Prci385g0004 795 CDD DEADc 138 336 - -
Prci385g0004 795 MobiDBLite consensus disorder prediction 705 727 - -
Prci385g0004 795 Pfam Zinc knuckle 775 791 IPR001878 GO:0003676|GO:0008270
Prci385g0004 795 MobiDBLite consensus disorder prediction 101 123 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci385g0004 141 509 Eukaryotic Initiation Factors Gene Family AT1G72730 37.566 2.25e-64 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci385g0004 - - pcin:129296705 1523.06