Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci350g0002 ATGTCGTCAATTATACAGATTTCTCGTGTAGATTTGGAGCAGGGAAGCCATCGAAGTGACATGAGTGCCGAGGCTAGCATTTGCTTCTCTGATGTTGAAGAGGGTTCTAGCTATTCCCACTTCTATTCAACAAATGGTGGCTCATACGATGAGTATAGCTTTGCATTTGTTTCTGATCCTGAGGTTATTGAGGACCTTCCCGAGTCTGGAAGAGCTTCTTCTGTCACTGAATGTTCAGTGGAGGTGGAAATTGAAGGTGGGGTTCCTGAAATTAAGGTGCATTTGGGTGTAGAAGAGAGAGAGTGTAGGATTTGTCACATGGGTTTGGAAAGTGAAAGCCATGAATCTGGGGTTCCAATTGAATTGGGTTGTTCTTGCAAGGATGATCTTGCAGCTGCTCATAAACTCTGTGCTGAAACCTGGTTCAAGATCAAAGGGAACAGGACATGTGAAATCTGTCATTCTGTGGCACGGAATGTGTTTGCAACGAACGAGGAGATGAGTGAGAATTTAAGTGACATCAACAATGCTATCACATTATTCACAGCTTCGGCGCCGGCTTCCCCAGACACTCCTCGAAGATTTTGGCAAGGCCGAGGCTTCCTGAATTTTATGCTTATTTGTATGGTGATCGCATTTGTCATATCGTGGGCTTTTCACTTCCATTTTCATTCACCTTAG 681 0.442 MSSIIQISRVDLEQGSHRSDMSAEASICFSDVEEGSSYSHFYSTNGGSYDEYSFAFVSDPEVIEDLPESGRASSVTECSVEVEIEGGVPEIKVHLGVEERECRICHMGLESESHESGVPIELGCSCKDDLAAAHKLCAETWFKIKGNRTCEICHSVARNVFATNEEMSENLSDINNAITLFTASAPASPDTPRRFWQGRGFLNFMLICMVIAFVISWAFHFHFHSP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci350g0002 226 Pfam RING-variant domain 102 153 IPR011016 GO:0008270
Prci350g0002 226 SUPERFAMILY RING/U-box 97 157 - -
Prci350g0002 226 CDD RING_CH-C4HC3_MARCH 102 154 - -
Prci350g0002 226 SMART ringv_2 101 154 IPR011016 GO:0008270
Prci350g0002 226 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Prci350g0002 226 PANTHER ZINC FINGER, RING-CH-TYPE 16 223 - -
Prci350g0002 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 164 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci350g0002 47 225 C3H Transcription Factor Family AT5G05830 52.486 1.51e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci350g0002 - - gmx:100808666 319.316