Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci342g0003 ATGGAAACATCGGGTGCTAATTCAGAACCATACGCCATTTCCTCTTCCTCCTCTTCAACTGTTGGAGTAAATAATAGTAACAGTAATAGCAGTGCCTTTACTGAAGCCTGGCACGGGATGAGGTTAGCCCCTGTCAGCTCCTTCCGTTCTCCAATTTCTCTTTTGTTGAATTACGCTGGCATTCTCCGCTCAAGTTCGCCAGCCCGCGACTCAGGGGCCTTGACAGTCAACAACGGAGTTACCACTTCGGAAGCACGCTCTCAGCTTTCCGAGTCCGGTGCCGCGTGCAGTGGCAGTACTGGTGAAGTTTCAATACGAATCATTGGGGCTGCAGAACAAGAACAGAGTGTCGCGTTAGGTTCCTTTTCTACTCCCACTTTGAATCAGCTTGGACAAGTCGATCATGTTGATTTGATGGGAAATAGAGGAGGAATGCCCGCATTGGATGACGATGCGGAGGCTCGCAATGGAAGAGTCCCTCTAGTGTCTTCATCTACATCTGCCGCTAGTGGACACGTGGATGAAGATGCTGGGAATGCCTCGGAAATTAACAATGGGGATTCATCCTCTTACCAGAGGTATGATATCCAGCAGGCTGCTAAGTGGATTGAGCAGATTCTTCCTTTCTCACTGTTGCTATTGGTTGTTTTCATTCGCCAGCATTTGCAAGGGTTTTTTATCACGATTTGGATTTCAGCTGTGATGTTCAAATCGAATGAAATTGTTAAGAGGCAGACAGCGCTGAAGGGAGACAGGAAAGTCTCAATTCTTTTTGGTATCTCTTTCGCCTTCATGCTTCACGTGATGTGCATTTACTGGTTGTATCGAAGTGATGATCTTTTATACCCCCTCATCATGATTCCTCCAAAATCAGCACCTCCTTTCTGGCATGCCATATTCATCATTTTGGTCAATGATACACTGGTGAGGCAAGTAGCAATGGCTTTCAAGTGTTTGCTGCTTATATTTTACAAAAATGGAAGAGGTCATAACTTCCGCCAGCAGGGCCAAATGTTGACTCTGGTTGAGTACTCATTGCTGCTGTATCGTGCCTTGTTGCCCACGTCAGTTTGGTACCGTTTTTTCTTAAACAAGGATTATGGGAGTCTCTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACATCTGTTATTGAGAAGGTTCAATGCTTCTTTTCTGCTTTAAAAGCATTATCAAGAAAGGAAGTTCATTATGGAATTTATGCCACAATGGAACAGGTAAACGCTGCGGGCGACCTATGTGCTATATGTCAAGAGAAGATGCATGCTCCAGTTTTGTTGCGCTGCAAGCACATTTTCTGTGAAGAGTGCGTATCCGAATGGTTTGAGAGAGAACGGACTTGCCCTCTGTGCAGAGCATTGGTAAAACCTGCCGACCTGCGGACTTTTGGGGATGGATCGACAAGTCTAATTTTCCAACTGTTTTAA 1458 0.4506 METSGANSEPYAISSSSSSTVGVNNSNSNSSAFTEAWHGMRLAPVSSFRSPISLLLNYAGILRSSSPARDSGALTVNNGVTTSEARSQLSESGAACSGSTGEVSIRIIGAAEQEQSVALGSFSTPTLNQLGQVDHVDLMGNRGGMPALDDDAEARNGRVPLVSSSTSAASGHVDEDAGNASEINNGDSSSYQRYDIQQAAKWIEQILPFSLLLLVVFIRQHLQGFFITIWISAVMFKSNEIVKRQTALKGDRKVSILFGISFAFMLHVMCIYWLYRSDDLLYPLIMIPPKSAPPFWHAIFIILVNDTLVRQVAMAFKCLLLIFYKNGRGHNFRQQGQMLTLVEYSLLLYRALLPTSVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVIEKVQCFFSALKALSRKEVHYGIYATMEQVNAAGDLCAICQEKMHAPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLIFQLF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci342g0003 485 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 21 485 IPR044235 GO:0061630|GO:1904294
Prci342g0003 485 Pfam Zinc finger, C3HC4 type (RING finger) 422 465 - -
Prci342g0003 485 ProSiteProfiles Zinc finger RING-type profile. 424 462 IPR001841 -
Prci342g0003 485 ProSitePatterns Zinc finger RING-type signature. 439 448 IPR017907 -
Prci342g0003 485 MobiDBLite consensus disorder prediction 162 184 - -
Prci342g0003 485 CDD RING-HC_RNFT1-like 422 462 - -
Prci342g0003 485 MobiDBLite consensus disorder prediction 1 25 - -
Prci342g0003 485 SUPERFAMILY RING/U-box 414 467 - -
Prci342g0003 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 472 IPR013083 -
Prci342g0003 485 SMART ring_2 424 461 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci342g0003 49 485 C3H Transcription Factor Family AT5G01960 64.760 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci342g0003 - K22379 qsa:O6P43_020068 691.804