Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci338g0006 ATGGCAGGTCTGGCTCCAGAAAGAACACAATTTGATGGTTGTCAATATGATGCTAAGATGACTGAATTGCTTTCCACTGATGGAGAAGAATTCTTCATCTCATATGATGAAGTTTACGACACTTTTGATGCCATGGGGTTACAAGAAAATCTTTTAAGAGGTTTTGAGAGGCCATCGGCAATTCAACAAAGAGGAATTGTTCCTTTCTGCAGAGGTCTTGATGTGATTCAACAGGCTCAATCTGGGACTGGGAAAACGGCCACTTTCTGTTCTGGAATTTTACAACAGCTTGATTATGGATTGGTTGAGTGCCAGGCCTTGGTTTTAGCACTAACAAGGGAGCTAGCACAGCAAATTGAGAAAGTTATGAGAGCTCTTGGTGATTACCTTGGTGTGAGGGTTCATGCTTGTGTTGGGGGCACAAGTGTACGTGAGGATCAGCGAATGCTCCAATCTGGTGTCCATGTTGTTGTTGGCACTCCCGGCCGTGTGTTTGACATGCTACGAAGGCAATCTCTTTGCCCAGACCACATAAAGATGTTTGCCTTAGATGAAGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATATTCCAGCTACTGCCTGGTAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGATATTACAATGAAGTTTATGAATAAACCGGTGAGAATCTTGGTGAAGCGTGATGAACTGACCCTTGAGGGTATCAAACAGTTTCATGTCAATGTTGAGAAAGAAGAGTGGAAGCTGGAGACATTATGTGATCTTTATGAAACGCTAGCTATCACACAAAGTGTCATTTTTGTGAATACTCGCAGAAAGGTGGACTGGCTCACTGATAAGATGAGAAGCAATGATCATACTGTCTCAGCTACACATGGTGACATGGATCAAAACACTCGTGACATTATCATGCGTGAATTCCGGTCTGGCTCATCGCGAGTTCTGATCACAACTGACCTCTTGGCTCGAGGTATAGATGTGCAGCAAGTCTCTTTGGTTATAAACTATGATCTTCCAACCCAACCTGAAAACTATCTTCATAGGATTGGGAGAAGTGGAAGGTTTGGAAGAAAAGGTGTTGCTATAAACTTTGTGAGTATGGATGATTTGAGAATGTTGTCTGATATTCAGAAGTTCTATAATGTGACCATAGAGGAGCTGCCATCAAATGTTGCTGATCTGCTTTGA 1227 0.4271 MAGLAPERTQFDGCQYDAKMTELLSTDGEEFFISYDEVYDTFDAMGLQENLLRGFERPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLALTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRMLQSGVHVVVGTPGRVFDMLRRQSLCPDHIKMFALDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALDITMKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVSMDDLRMLSDIQKFYNVTIEELPSNVADLL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci338g0006 408 SMART helicmild6 288 369 IPR001650 -
Prci338g0006 408 Gene3D - 32 243 IPR027417 -
Prci338g0006 408 CDD SF2_C_DEAD 248 378 - -
Prci338g0006 408 FunFam Eukaryotic initiation factor 4A-II 28 242 - -
Prci338g0006 408 Gene3D - 244 408 IPR027417 -
Prci338g0006 408 FunFam Eukaryotic initiation factor 4A-III 243 408 - -
Prci338g0006 408 CDD DEADc_EIF4A 44 237 - -
Prci338g0006 408 Pfam DEAD/DEAH box helicase 60 221 IPR011545 GO:0003676|GO:0005524
Prci338g0006 408 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 390 - -
Prci338g0006 408 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 236 IPR014001 -
Prci338g0006 408 SMART ultradead3 54 251 IPR014001 -
Prci338g0006 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 389 IPR027417 -
Prci338g0006 408 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 408 IPR001650 -
Prci338g0006 408 Pfam Helicase conserved C-terminal domain 261 369 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci338g0006 1 408 Eukaryotic Initiation Factors Gene Family AT1G72730 84.541 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci338g0006 K03257 - gmx:100817948 754.977