Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci338g0001 ATGGGAAATCAAAAGCATAAGTGGACCGCGGAGGAAGAAGAAGCTTTGCTCGCTGGCATTGGGAAGCATGGCCCCGGGAAGTGGAAGAATATTCTCAAAGATCCTGAATTTGCCCCGTTTCTCACTCACCGTTCCAACATCGATCTGAAGGATAAATGGCGAAATTTAAGTGTCAGTACTGCAGCTCAAGGATCTAAAGAAAAAGCTAGGAATCCAAAGATTAAAACTACGGAAGCTTCTACACTTGCGGGCACGCAAAATGCTTCTGTTGCTCCTCCACTCCGTCAATGTGCACCTTCTGATGCCGCCACAGATGATTCTTCTCACAATGCACAGGATGTCAAACATGCTCCACAGTACAATGCAATGATTTTTGAAGCCCTATCAATGATAAGTGATTCCAATGGATCTGACTTAAATGCTATTGTTAGCTTCATTGAGCAAAAGCATGAGGTTCCTCAAAATTTCAGACGAGCAGTAGGTGCAAGGTTGAGGAAACTTGTTGATCAAGGAAAACTTGAAAAGGTACAAAACTGTTACAAGATGAAGAGAGCGACGCCCGTGGAGACAAAACCACCTGTACCAAAGCAAAACGATTCTAAGTCACTTCAACCACCAGCCTCTGGATTTACAGCATCTCAGGAGACAGAAATGGATGCTGCGGAGATCTTGGCATACAGAATTGCTGAAGCAGAGCACAAATCACATTGGGCTGCTGAAGCAGTCAAGGAGGCGGAAAAATTCTCAAAGTTGGTTGAAGATGCCGATGCAATGTTAAAGCTAGCGAAAGAGATTTATGAGCAATGTTCACGGGGTGAAATCATCCTCTTTGCTTAG 837 0.4421 MGNQKHKWTAEEEEALLAGIGKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTAAQGSKEKARNPKIKTTEASTLAGTQNASVAPPLRQCAPSDAATDDSSHNAQDVKHAPQYNAMIFEALSMISDSNGSDLNAIVSFIEQKHEVPQNFRRAVGARLRKLVDQGKLEKVQNCYKMKRATPVETKPPVPKQNDSKSLQPPASGFTASQETEMDAAEILAYRIAEAEHKSHWAAEAVKEAEKFSKLVEDADAMLKLAKEIYEQCSRGEIILFA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci338g0001 278 SUPERFAMILY "Winged helix" DNA-binding domain 116 196 IPR036390 -
Prci338g0001 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci338g0001 278 Pfam linker histone H1 and H5 family 118 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci338g0001 278 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci338g0001 278 FunFam Telomere repeat-binding factor 1 8 87 - -
Prci338g0001 278 SMART sant 4 59 IPR001005 -
Prci338g0001 278 MobiDBLite consensus disorder prediction 193 214 - -
Prci338g0001 278 PANTHER SINGLE MYB HISTONE 4 1 276 IPR044597 GO:0003691
Prci338g0001 278 Gene3D - 112 197 IPR036388 -
Prci338g0001 278 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Prci338g0001 278 MobiDBLite consensus disorder prediction 185 214 - -
Prci338g0001 278 FunFam Telomere repeat-binding factor 1 2 58 - -
Prci338g0001 278 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Prci338g0001 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Prci338g0001 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Prci338g0001 278 MobiDBLite consensus disorder prediction 75 93 - -
Prci338g0001 278 MobiDBLite consensus disorder prediction 60 111 - -
Prci338g0001 278 CDD SANT_TRF 6 56 - -
Prci338g0001 278 Gene3D - 8 85 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci338g0001 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.379 2.94e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci338g0001 Linker_histone 2.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci338g0001 K09422 - jre:109002017 352.443