Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci328g0004 ATGGCAAATCCTGTTGAACTTTCAGCCCTCAATCGTATAAAATTGCATCTTCTAGGTGAACTGTCTCCTGTTGGCAGTTCAGCAAGCGACGCTATCCAACACCTACAGCTCTCGTTTGGTGAACCGAACGGAGCAATTACCAGCTCTGATTCTGACTCTCTTTGTTCCCAATCATCAAGTTCTGACTCTTCTATCACTGTGTCTGATTACCTCCCTGAACTATTCGACTTCCCATCAAACCTATTTGAGTTCGAGTTCAAAAATCAAGTCATTGACCTCTCAACGCCCAAATTCGAAACCGAAGCTTCACAATTTAACTCCCATTTTTCCGAATCAAATGCAAACTCACAGGCAACTTCAAGCTCTAGCTCACAGACCAGCAGTTGTATGTTCGAGTTTCAAACTACACCCCAAATCGTCGAGAAGAAATCTCACTTAAATCGGAAACCATCGCTGAAAATTACGCCACCGAAAAAAACCGAGTGGATCCAATTTGGAAACCCGGATCAACAACAGGAGGTTTCAGAGGTGTTCGTGCAGAATAAGTCAGACCTTGAAGTAAAAAGGCACTACAGAGGAGTCCGACAGAGACCATGGGGCAAGTTCGCAGCAGAAATTCGGGACCCGAACAAACGTGGATCTAGGGTGTGGCTCGGAACGTTCGATACGGCGATCGAAGCCGCAAAAGCCTACGATCGAGCCGCGTTTAAGCTTCGCGGATCCAAAGCCATACTCAATTTCCCTCTGGAAGCAGGAACCTCCGGTTCGACGGACGGCACGGAGGAGAAAAAACGCCGGCGGCAAGATGATGCGGTGGAGGCTGAAATGGAAGTTAAACCAGTAGTGAAGAAAGAGAGAACGGCGGAATCTGACGTGGGAAGAATAAGGGATACACCGCTAACGCCGTCAATGTGGACAGGCTTCTGGGATAGTGATTTGAAGGACATCTTCGCAGTCCCGCCGTTATCGCCGTTATCTCCTCACCCCACTTTGGGTTATCCACAACTCATGGTTGTATGA 1020 0.4784 MANPVELSALNRIKLHLLGELSPVGSSASDAIQHLQLSFGEPNGAITSSDSDSLCSQSSSSDSSITVSDYLPELFDFPSNLFEFEFKNQVIDLSTPKFETEASQFNSHFSESNANSQATSSSSSQTSSCMFEFQTTPQIVEKKSHLNRKPSLKITPPKKTEWIQFGNPDQQQEVSEVFVQNKSDLEVKRHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEAGTSGSTDGTEEKKRRRQDDAVEAEMEVKPVVKKERTAESDVGRIRDTPLTPSMWTGFWDSDLKDIFAVPPLSPLSPHPTLGYPQLMVV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci328g0004 339 MobiDBLite consensus disorder prediction 249 272 - -
Prci328g0004 339 FunFam Ethylene-responsive transcription factor 2 189 250 - -
Prci328g0004 339 SUPERFAMILY DNA-binding domain 190 249 IPR016177 GO:0003677
Prci328g0004 339 Gene3D AP2/ERF domain 189 250 IPR036955 GO:0003700|GO:0006355
Prci328g0004 339 Pfam AP2 domain 190 240 IPR001471 GO:0003700|GO:0006355
Prci328g0004 339 PANTHER DNA-BINDING DOMAIN 115 264 IPR044808 GO:0003700|GO:0009873
Prci328g0004 339 PRINTS Ethylene responsive element binding protein signature 191 202 IPR001471 GO:0003700|GO:0006355
Prci328g0004 339 PRINTS Ethylene responsive element binding protein signature 230 250 IPR001471 GO:0003700|GO:0006355
Prci328g0004 339 MobiDBLite consensus disorder prediction 257 272 - -
Prci328g0004 339 CDD AP2 190 248 IPR001471 GO:0003700|GO:0006355
Prci328g0004 339 SMART rav1_2 190 254 IPR001471 GO:0003700|GO:0006355
Prci328g0004 339 ProSiteProfiles AP2/ERF domain profile. 190 248 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci328g0004 1 339 AP2-EREBP Transcription Factor Family AT5G47230 44.152 3.05e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci328g0004 AP2 5.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci328g0004 K09286 - qsa:O6P43_034054 370.933