Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3950 ATGAGTTGCTTTCCGTGTTGTGCGTCGAAAGGAAAGAGCAATCGGAAGGCGCTGCAGAAGAGCATTAAGGAGTACAATGCTTCAAAATCTATAGCCTCATTTACCAACATTTCTTTTAAAAGTGACGCCAGTAGACAAAGGTACATAACTGAAGAAATTAAGAAGATTGGAAAAAGAAATATTACTGCTAAAATTTTCAGCTATCAAGAGCTATGCGTTGCAACTCAGGACTTTCACCAAGACAACTTGATTGGCGAAGGAGGCTTTGGCAGGGTATACAAAGGATATCTCGAAAGCACAAATCAAGTTGTTGCGGTGAAGCAACTTGATAGGAATGGATATCAAGGAAACAAAGAATTCCTTGTAGAGGTTTTGCTTTTGAGTCTCCTGGACCACCCCAACCTTGTCAATTTGGTAGGTTATTGTGCTGATGGTGATCAAAGAATTTTGGTCTATGAGTACATGGTCAATGGTTCTTTAGAAGATCACCTCCTTGAATTAACTGAAGATGAAAAGCATTTGGATTGGGGTACTAGAATGACAATTGCTCAAGGTGCAGCGAAAGGACTAGAGTATTTACATGAGGTAGCAAACCCACCAGTGATATACAGGGATTTCAAGACATCAAACATACTATTGGACGAAGATTTTAATCCAAAACTCTCTGATTTTGGATTGGCAAAGCTTGGTCCAACTGGAGAACACTCTCATGTGTCCACAAAAGTAATGGGAACTTATGGTTATTGTGCTCCTGAGTATGCACTCACAGGACAACTAAGTACAAAGTCAGATGTATATAGTTTTGGAGTTGTCTTCTTAGAAATGATCTCGGGAAGAAGAGTGTTTGATCATTCAAGGCCAACTGCAGAGCAAAATTTAGTCCTTTGGGCGCAACCACTATTGAAAGACAAAAGAAAGTTCACATTAATCGTTGATCCATTACTAGAAGATGATTACCCCATAAAGGGTTTGTACCAAGCTCTAGCAGTTGCAGCAATGTGTCTCCAAGAGGAAGCTTCTACTCGACCTTTGATTAGCGACGTAGTCTCCGCAATGGAGTTTCTGGCTATCAAGAATGTGAAAGGTGATGATGAAGAAAATGATGAGCATACTTTCGACTCTTCTTCTGAGGATGACAACAAGGACTGCAGCATTGGCGGCTATGAATCTGATAGCATACTTGATCGCAAAATACATAATTAA 1203 0.4007 MSCFPCCASKGKSNRKALQKSIKEYNASKSIASFTNISFKSDASRQRYITEEIKKIGKRNITAKIFSYQELCVATQDFHQDNLIGEGGFGRVYKGYLESTNQVVAVKQLDRNGYQGNKEFLVEVLLLSLLDHPNLVNLVGYCADGDQRILVYEYMVNGSLEDHLLELTEDEKHLDWGTRMTIAQGAAKGLEYLHEVANPPVIYRDFKTSNILLDEDFNPKLSDFGLAKLGPTGEHSHVSTKVMGTYGYCAPEYALTGQLSTKSDVYSFGVVFLEMISGRRVFDHSRPTAEQNLVLWAQPLLKDKRKFTLIVDPLLEDDYPIKGLYQALAVAAMCLQEEASTRPLISDVVSAMEFLAIKNVKGDDEENDEHTFDSSSEDDNKDCSIGGYESDSILDRKIHN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3950 400 MobiDBLite consensus disorder prediction 364 400 - -
Prci2g3950 400 Pfam Protein kinase domain 78 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g3950 400 MobiDBLite consensus disorder prediction 364 385 - -
Prci2g3950 400 FunFam Serine/threonine-protein kinase PBS1 155 371 - -
Prci2g3950 400 CDD STKc_IRAK 84 353 - -
Prci2g3950 400 SUPERFAMILY Protein kinase-like (PK-like) 61 355 IPR011009 -
Prci2g3950 400 Gene3D Phosphorylase Kinase; domain 1 37 154 - -
Prci2g3950 400 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Prci2g3950 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Prci2g3950 400 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Prci2g3950 400 Gene3D Transferase(Phosphotransferase) domain 1 155 381 - -
Prci2g3950 400 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci2g3950 400 PANTHER OS07G0668900 PROTEIN 3 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3950 Prci-Chr2 48590166 48594814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3950 1 356 Glycoside Hydrolase AT3G07070 61.496 4.74e-156 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Prci2g3950 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3950 - - qsa:O6P43_021135 577.785