LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g3928	ATGGCCAAGAAGCGAAAGATTCGATCATCTGAGATCGAATCTGCTAAGACATCTGATTCACAACCTGCACAACAAGAACAAACCCAAGAACAGCAAATCCATGAGGAAGTTAGAGTTGACGAACAACCAAACCCGGAAGCAACCCTGGAAGAAGAGCACCAGGGACACGAAACGATGGCTGTGGATGATGATACGCATCAGGAAGATGTACAATTGGAAGAAAACGCGGATGCAGGTGTATCTCCAGAAGTTCACCCTCAAGAGCAGGTTGTTGAACGCCGAGAAACAGCGGAAGCTGTAACCGGTGCTGCCCCATCTGAATCAGCTGAGGTTGATGCGAATGGAGCCGAGGAAGGCAACGAGAACGATGATGATGATGAGGTTTTGGACGAAGAAGAGCCTTTAGAGAAGCTTCTTGAGCCTTTTACAAAGGAGCAGCTCTACTCTCTTGTCAAGCAAGCTGCAGAGAAGTACCCGGATTTTATCGACAACGTCCGTCAGCTGGCGGACGTCGATCCTGCCCACCGAAAAATCTTCATCCACGGTCTTGGCTGGGACACCACTGCGGAAACCCTTACGAGTGTTTTTGGGAAGTATGGTGAGATTGAGGATTGCAAGGCTGTCATCGATAGGGTCTCTGGGAAATCAAAAGGTTATGCCTTCATCTTGTTCAAGCACCGAAGTGGCGCTCGAAAGGCGCTGAAACAGCCGCAGAAAAAGATTGGGAACCGTACAACATCGTGTCAATTGGCCTCCGCTGGACCAGTCCCCTCACCTGCTACAGTGGCCCCACCGGTGTCTGAATATACTCAAAGGAAGATCTTTGTTAGCAATGTAAGTGCAGAACTGGATCCCCAAAAATTGCTTGAGTTCTTCGGTCAATTTGGGGAGATAGAGGATGGTCCCTTGGGTCTTGATAAGCAGACGGGGAAGCCGAAGGGATTTGCATTGTTTGTATACAAGTCAGTAGAGAGTGCAAAGAAGGCTTTGGAAGAACCTCACAAAAACTTTGAAGGGCATACATTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCAACATCACCAGCAGCAGCATCATTCTCATCATCATCAGCCTCATTACCAGTCAAGAAAGGAGAAAACTAAGTATCAGTCTGGCGGGCATGGACCGGGACCCGGACACCTAATGGCGCCCTCAGCTCCTTCTGTCGGTTTCAATCCTGGAGTGGCAGCACAGGGACTGAATCCGGCACTTGGGCAGGCCTTGACTGCTTTGCTCACCACCCAAGGTGCAGGGCTAGGGCTGGGTAACCTGCTTGGAGGTCTTGGTGGTGCCCCCACAAACCAGGCTGGGCCCCCTGCTGGATATGTCAATCAACCTGCTGTGGGCTACGGGAACCAACCAGGAATGCAAGGGGGGTACCAGAATCCACAAATGGGGCAGAGCAGTGGTGTTAGGCCTCATCCTGGCCCTGGCGCTCCTTACATGGGTCATTAG	1494	0.508	MAKKRKIRSSEIESAKTSDSQPAQQEQTQEQQIHEEVRVDEQPNPEATLEEEHQGHETMAVDDDTHQEDVQLEENADAGVSPEVHPQEQVVERRETAEAVTGAAPSESAEVDANGAEEGNENDDDDEVLDEEEPLEKLLEPFTKEQLYSLVKQAAEKYPDFIDNVRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVIDRVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPATVAPPVSEYTQRKIFVSNVSAELDPQKLLEFFGQFGEIEDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYQHHQQQHHSHHHQPHYQSRKEKTKYQSGGHGPGPGHLMAPSAPSVGFNPGVAAQGLNPALGQALTALLTTQGAGLGLGNLLGGLGGAPTNQAGPPAGYVNQPAVGYGNQPGMQGGYQNPQMGQSSGVRPHPGPGAPYMGH	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g3928	497	SUPERFAMILY	RNA-binding domain, RBD	258	371	IPR035979	GO:0003676
	Prci2g3928	497	MobiDBLite	consensus disorder prediction	31	66	-	-
	Prci2g3928	497	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	176	253	IPR000504	GO:0003723
	Prci2g3928	497	MobiDBLite	consensus disorder prediction	114	130	-	-
	Prci2g3928	497	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	272	350	IPR000504	GO:0003723
	Prci2g3928	497	MobiDBLite	consensus disorder prediction	1	130	-	-
	Prci2g3928	497	Gene3D	-	260	390	IPR012677	-
	Prci2g3928	497	Gene3D	-	142	259	IPR012677	-
	Prci2g3928	497	MobiDBLite	consensus disorder prediction	14	30	-	-
	Prci2g3928	497	MobiDBLite	consensus disorder prediction	348	396	-	-
	Prci2g3928	497	MobiDBLite	consensus disorder prediction	468	482	-	-
	Prci2g3928	497	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	98	352	-	-
	Prci2g3928	497	MobiDBLite	consensus disorder prediction	358	375	-	-
	Prci2g3928	497	SUPERFAMILY	RNA-binding domain, RBD	165	255	IPR035979	GO:0003676
	Prci2g3928	497	SMART	rrm1_1	177	249	IPR000504	GO:0003723
	Prci2g3928	497	SMART	rrm1_1	273	345	IPR000504	GO:0003723
	Prci2g3928	497	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	274	342	IPR000504	GO:0003723
	Prci2g3928	497	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	178	245	IPR000504	GO:0003723
	Prci2g3928	497	MobiDBLite	consensus disorder prediction	466	497	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g3928	Prci-Chr2	48229044	48235290	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g3928	251	351	C2H2 Transcription Factor Family	AT2G19380	28.713	6.75e-09	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g3928	K12741		-	gmx:100792637	595.504