Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3718 ATGCAATCCGACAATGGTAAGTTATTTGTTGGCGGAATATCATGGGACACGAATGAAGAACGGCTTAGAGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTTATCATGAAGGATCGGACGACAGGAAGAGCCCGTGGATTTGGTTTTGTAGTTTTTGCCGACCCAACTGTTGCAGAGAGAGTCATAAAAGAGAAGCACAGCATTGATGGAAGGATGGTTGAGGCCAAGAAGGCTGTTCCAAGGGATGAACAGAGCATACTGAGTAGAAACAGCGGTAGCAACCATGGTTCTCCAGGTCCAGGCCGCACAAAAAAGATATTTGTTGGTGGTTTAGCATCTACAGTTACAGAGAGTGATTTCAAGAAGTACTTTGATCAATTCGGGACAACAACAGATGTTGTAGTTATGTATGATCACAATACTCAGAGACCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGTTGTTGAGAAGGTCTTACTTAAGACCTTTCATGAACTGAATGGCAAAATGGTTGAAGTCAAGCGTGCAATTCCTAAGGAACTATCACCTGGGCCAAACAGAAGCCCACTTACTGGATATAACTATGGTATGAATAGGGTCAATAGTTTCCTAACTGGCTTCACCCAAGGCTATGCCCCTGGTGCTGTTGGAGGTTTTGGACTGAGGATGGATGGTAGATTCAGTCCCGTTGCAAGTGGCCGAAGTGGATTTTCTCCATTTGGATCTGGCTATGGGATGAATATGAATTTTGAGCCCAGTTTGAGCCCCGGATTTGGAGGGAATGCAAATTTCAATAACAATCTTAACTATGGTCGGGCATTAAATCCATATTATATTGGAAGCTCAAGTAGGTTTGGGAGTCCTATTGGATATGATGGTGGCAATGGAGGAAACAATTCTTTCTTCAGCTCAGTAACTCGGAACTTGTGGGGAACTGGTAGCCTTAATTATGGAACAAGTTCTGCTAATTCCAGTGCTTACACTGGATCAGGAAGTGGGAATGTTGGGGGAAATATTTATGGCAATGCTGGAGTCAATTGGGGTGCTCAAGGTACAATGAACGTGTCACAAAGTAGTGGTAACCTTGGCTTTGGGGGAGATGACAATAGTTATGGTTTGGGAACTGGAGGTTATGGAAGAAACAGTGGTACAAATGTTGCTCCAACATCATCACACTCTGCATCAAATGGTGGTTTTGATGGAGCTTTGGCTGATTTATACAATAGTAGTTCAGTTTACGGGGACCCCACTTGGCGGTCTTCAAATTCTGAGCTGGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGTTGCAGCTTCAGATGTTTCTGCTAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGAATTGCTACATAG 1419 0.4341 MQSDNGKLFVGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFADPTVAERVIKEKHSIDGRMVEAKKAVPRDEQSILSRNSGSNHGSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEVVEKVLLKTFHELNGKMVEVKRAIPKELSPGPNRSPLTGYNYGMNRVNSFLTGFTQGYAPGAVGGFGLRMDGRFSPVASGRSGFSPFGSGYGMNMNFEPSLSPGFGGNANFNNNLNYGRALNPYYIGSSSRFGSPIGYDGGNGGNNSFFSSVTRNLWGTGSLNYGTSSANSSAYTGSGSGNVGGNIYGNAGVNWGAQGTMNVSQSSGNLGFGGDDNSYGLGTGGYGRNSGTNVAPTSSHSASNGGFDGALADLYNSSSVYGDPTWRSSNSELDGSGPFGYGLGVAASDVSAKSSPGYVGGYTVNKRQPNRGIAT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3718 472 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Prci2g3718 472 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Prci2g3718 472 Gene3D - 4 88 IPR012677 -
Prci2g3718 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Prci2g3718 472 SMART rrm1_1 107 179 IPR000504 GO:0003723
Prci2g3718 472 SMART rrm1_1 7 78 IPR000504 GO:0003723
Prci2g3718 472 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 468 - -
Prci2g3718 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Prci2g3718 472 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Prci2g3718 472 MobiDBLite consensus disorder prediction 86 100 - -
Prci2g3718 472 CDD RRM2_Hrp1p 107 184 - -
Prci2g3718 472 Gene3D - 103 189 IPR012677 -
Prci2g3718 472 SUPERFAMILY RNA-binding domain, RBD 104 203 IPR035979 GO:0003676
Prci2g3718 472 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Prci2g3718 472 MobiDBLite consensus disorder prediction 81 105 - -
Prci2g3718 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Prci2g3718 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3718 Prci-Chr2 46517653 46523674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3718 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 30.688 2.05e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3718 K14411 - gmx:100795907 778.089