Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3647 ATGGCTGAAGCTTCGAGGACCCTGTACACCACTACCCTCATTCCCAGTCTGAGTCCGACGAGGAAAACTCAAGTGATTCAGCGTCATCTAACTATTCCCCGCAAGCCGCAAATTCACTGTTCAGTTTCTGCAAGTGATGCCACGAAAACTGCTGCGACGGAAACCATAACATGGGGCTGCGAGATTGATTCCCTGGAAAACGCATCGGTTCTGCAGAGATGGTTGTCTGATTCAGGCCTCCCTCCACAGAAGATGGCCATTGAGAGGGTGGAAGTTGGGGAGAGAGGACTTGTTGCCTTGAAGAGTATAAGGAAGGGAGAGAAATTGCTCTTTGTGCCTCCTTCACTAGTCATCACTGCAGATTCTGAATGGAGCTGCCCAGAAGCTGGTAAAATTTTGAAAAGGAACTCAGTGCCAGACTGGCCACTGCTTGCAACTTATCTCATCAGCGAAGCAAGCCTCATGAAATCTTCAAGATGGAGCAGTTATGTTTCAGCCTTACCTCGACAACCTTATTCACTTCTTTACTGGTCACGAGCAGAACTAGATCGTTATTTGGAAGCCTCACAGATTAGGGAAAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAACGATTTGAGGCTCAGAATATTTTCCAAGCATCCTAGTTTATTCCCTGAAGAGGTGTTCAACATTGAGACCTTCAAGTGGTCATTTGGCATTCTTTTCTCTCGCTTGGTCCGATTACCTTCAATGGATGATAAGTTTGCATTGGTTCCATGGGCAGATATGCTGAACCATAGTTGTGATGTGGAAACATTTTTGGATTATGATAAATCATCAAAGGGAATTGTCTTTACCACAGATCGTCCCTACCAACCAGGTGAGCAGGTGTTTATTTCATACGGCAAGAAATCTAACGGAGAGCTTTTGCTATCTTATGGATTCGTTCCAAAGGAAGGCACTAATGCTAGTGATTCAGCTGAGTTATTATTGTCACTCAAGAAGTCTGATAAATGCTACGATGAGAAGTCACAACTCTTGAAGAAAAATGGGCTGTCAGCATCACAGTGCTTCCCTGTAAAAGTTACTGGTTGGCCGTTGGAGTTAATGGCATATGCCTATTTAGCTGTGAGCCCTCCAAGCATGAGAGGCCAATTTGAAGAGATGGCCGCTGCAGCATCAAATAAAACAACTGTAAAGAAGGATTTGAAATATCCAGAAATAGAAGAGCAAGCATTGCAATTTGTACTAGACAGCTGTGAATCCAGCATATCAAAGTACAAAAAATTTTTACAGGAAAGTGGATCACTTGACTTGGACGTGACTTCTCCAAAGCTACTCAATCGACGACTCTTTTTGAAACAACTAGCTGTGGACTTGTGCATTAGCGAGCAAAGAATACTATTTCGTGCTCAATATATACTGCGAAGCAGGCTGAGGGATATGAGGACTGGTGGATTGAGAGCCCTACGAATTTTCGATGGGTTTAGAAATCTTTTCCAATGA 1497 0.4329 MAEASRTLYTTTLIPSLSPTRKTQVIQRHLTIPRKPQIHCSVSASDATKTAATETITWGCEIDSLENASVLQRWLSDSGLPPQKMAIERVEVGERGLVALKSIRKGEKLLFVPPSLVITADSEWSCPEAGKILKRNSVPDWPLLATYLISEASLMKSSRWSSYVSALPRQPYSLLYWSRAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKHPSLFPEEVFNIETFKWSFGILFSRLVRLPSMDDKFALVPWADMLNHSCDVETFLDYDKSSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNASDSAELLLSLKKSDKCYDEKSQLLKKNGLSASQCFPVKVTGWPLELMAYAYLAVSPPSMRGQFEEMAAAASNKTTVKKDLKYPEIEEQALQFVLDSCESSISKYKKFLQESGSLDLDVTSPKLLNRRLFLKQLAVDLCISEQRILFRAQYILRSRLRDMRTGGLRALRIFDGFRNLFQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3647 498 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 51 312 - -
Prci2g3647 498 Gene3D - 318 481 IPR036464 -
Prci2g3647 498 CDD SET_RBCMT 82 313 IPR044431 GO:0016279|GO:0018022
Prci2g3647 498 Gene3D set domain protein methyltransferase, domain 1 25 312 - -
Prci2g3647 498 FunFam Rubisco methyltransferase family protein 318 481 - -
Prci2g3647 498 ProSiteProfiles SET domain profile. 83 299 IPR001214 GO:0005515
Prci2g3647 498 SUPERFAMILY SET domain 69 316 IPR046341 -
Prci2g3647 498 PIRSF RMT_SET 2 495 IPR011192 GO:0009507|GO:0030785
Prci2g3647 498 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 329 493 IPR036464 -
Prci2g3647 498 Pfam Rubisco LSMT substrate-binding 332 465 IPR015353 -
Prci2g3647 498 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 66 432 - -
Prci2g3647 498 SMART set_7 83 305 IPR001214 GO:0005515
Prci2g3647 498 Pfam SET domain 95 299 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3647 Prci-Chr2 46138640 46145123 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci2g3647 SET 7.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3647 - - qsa:O6P43_014453 831.632