Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3629 ATGTCGCAAAATAAATACAGGAATTTATGGTGTCATCTGCTTCATTTATTTATTACAGAAACAGCGAGTATGGCTCCAACAACACCGCAAATCATTACATGCAAAGGTGCTGTGTGGTGGGGCGGCGGAGAAAACGATGTGAGGGTGGAAGACATACAAGTCGATCCTCCCAAAGCGACCGAAGTTCGAGTGAAGGTGCTCTGTGCTAGCATCTGCCACACCGACATCGTTTGGGCCAGAGGATTTCCCATCCCTTTGGCTCCTCGAGTATTAGGGCATGAAGGAGTTGGCATTGTCGAGAGCATTGGGGAGAAAGTAACAGATCTAAAAGTAGGCGATGTTGTGATTCCCACATATGTTGGTGAATGTCAAGAATGTGAGAACTGCATTTCAAGGGAATCCAACTTTTGCCTGAAATACCCTATGAGAATAAATGGTCTAATGATGGATAACACATCAAGGATGTCCATAAGGGATCAAAAGATATTCCATCTCTTTAGTTGTTCTACATTTGCAGAGTACATGGTCACTGAAACAAACTACCTTGTCAAAGTTGATCCGGATATCGACCCGGCCAATGCTAGCTTCATCTCTTGTGGGTTCTCAACTGGTTTTGGAGCTGTTTGGAAGGAAGCCAAGGTTGAAAGTGGATCATCTGTCGCTGTTTTTGGCCTCGGTGCTGTTGGATTAGGGGCTATAAGCGCAGCCAAAATAATGGGGGCAACTAAGATAATTGGGATTGACAAAAATGAGATGAAGAAAGTAAAAGGAGAAGCTTTTGGAATGACAGATTTTATCAATCCTGATGCATCTGACAAACCATCTTCAGAGTTGGTGAAGGAATTGAGTGGTGGAATGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTATCCCCTTGGTTTCTCAAGCCCTGCAAGCCACAAAATTGGGAAAGGGAAAGACAATAGCAATTGGTTCAGTAACTGAAGAATTTGTGCCCATCAACTTTCGTTCTATCTTACTTGGGCGAACTTTAAAAGGTTCCCTTTTTGGAGGACTAAAGCCCCAATCTGACCTGCCTTTCATAATTGACAAATGCCTCAAGAAGGAGTTCCCTCTTCGTGAACTGCTAACTCATGAAGTGCCCTTGACAGATATAGACAAAGCTTTGGAGCTATTAGGAAAACCAGATTGTATCAAAGTTGTCATTAGGATGTGA 1200 0.4325 MSQNKYRNLWCHLLHLFITETASMAPTTPQIITCKGAVWWGGGENDVRVEDIQVDPPKATEVRVKVLCASICHTDIVWARGFPIPLAPRVLGHEGVGIVESIGEKVTDLKVGDVVIPTYVGECQECENCISRESNFCLKYPMRINGLMMDNTSRMSIRDQKIFHLFSCSTFAEYMVTETNYLVKVDPDIDPANASFISCGFSTGFGAVWKEAKVESGSSVAVFGLGAVGLGAISAAKIMGATKIIGIDKNEMKKVKGEAFGMTDFINPDASDKPSSELVKELSGGMGVDYSFECTGVIPLVSQALQATKLGKGKTIAIGSVTEEFVPINFRSILLGRTLKGSLFGGLKPQSDLPFIIDKCLKKEFPLRELLTHEVPLTDIDKALELLGKPDCIKVVIRM 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3629 399 PANTHER ALCOHOL DEHYDROGENASE 30 391 - -
Prci2g3629 399 Gene3D - 204 342 - -
Prci2g3629 399 SUPERFAMILY GroES-like 350 398 IPR011032 -
Prci2g3629 399 Pfam Alcohol dehydrogenase GroES-like domain 60 185 IPR013154 -
Prci2g3629 399 FunFam alcohol dehydrogenase 1-like isoform X1 43 203 - -
Prci2g3629 399 Gene3D - 45 394 - -
Prci2g3629 399 FunFam S-(hydroxymethyl)glutathione dehydrogenase 204 342 - -
Prci2g3629 399 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 92 106 IPR002328 GO:0008270|GO:0016491
Prci2g3629 399 SUPERFAMILY GroES-like 27 215 IPR011032 -
Prci2g3629 399 SMART PKS_ER_names_mod 43 397 IPR020843 GO:0016491
Prci2g3629 399 Pfam Zinc-binding dehydrogenase 227 346 IPR013149 -
Prci2g3629 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 189 362 IPR036291 -
Prci2g3629 399 CDD liver_alcohol_DH_like 32 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3629 Prci-Chr2 46001883 46006240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3629 60 391 Monolignol Biosynthesis Gene Families AT2G21730 26.254 3.29e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3629 K00121 - gmx:100798341 525.013