Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3600 ATGAGAACGAAATCTCATGATGGAGGCAGGGCTAAAACTTCTACAAAACCCTCCCATCCTACTGTGAGGGCAATTCCTCGAGATGCAGATGGTGCAGCTGTGCCTAAAATATCCAATGAGAGTAATCGTGATCTGCTAGATGTTAGAGAGGTGGATTCAAAAGACAATTTGGATAATGTAATTCATGAGGGCTCTAATAGAATGCCTCATGAGAGTCTAGGTCATGACAACATTTGTACAGATGTTTTTGATGGAAAGATTTGCATCCGTTGCAATGAAGGTGGAGAAGTATTAATTTGCAGTGAAAGTGGTTGTCCTGTTACTGTCCATGCAAAATGTATCAGCTGCAAACCTAAATTTGATGGTATAGGGAACTACTACTGCCCTTATTGCTGGTTAAAACGAACTTTGGCAGAGGTCCAAGTATTGAGGAAAAAGGCCTTAACAGCGAAGAAAGATTTGTCTGACTTTTTAGGTAACAGTGGGAGCATGAGTAGTAAGTTGGCCCAAAATTACGGGGAAGCAGGAAAAGATTCCAACGAGTTATCCCTTGGGGGAAATGGGAGCCGCATGGATTACAAGAGTGGGCAGGAAAATGGCAGTGCATGCGCATGGTCCTTGCAGAGAGTGGAAGATCAACAAAAAGAAACGGAAGGAGTGACATCTAGTGCTGATCAACATGAAATAGCAGTTGAAGATGAAACTCATGCAAATGCTGAAGTGGCCAATACTGGTTCTATGCATCATGTGGAAGAAAAGACACCAGAGCATATGGATCTGATTGATAAATCCATGACCAGGGAGAAAGTTGATCATAAAATTTCAGAGGCACATAAAACCACTTTTGTTGAAGGAAAAGAGGGGATTGAACCAGAGCATCCAAAATATAGTGATAAAAGCCTTGACGAAGGGATCCCTGAGGATGAAGAGGAAGTATCCCCTTCGAGCTCATACCATTTGGGAAAACACAAAGATGGACCCTCACCTGATATTGCAATTGTCAAAGGGACACAAGAAAGTGGTGCTGTGACTGTAGATAAAAAGGACACAAGGCAAGACAGAGAGAAGTTGCTCCAGAATGAATCAAGGACGCCTTCAATGGGTACTTCTGTCAGTGAAACTGATGATTCAGGTTCTGAAGCTCTCTTAATGAAGAAAAGACGTGTCAAACATATGGCAAAGAGGCATCCTCAGAGAGTTATGAATGCTGAGGGTGAAACTGGTTGTCACAAAGATGAGGAAGTTACCAGTTCTGGAACTTTGAGACGGGTCCAGAAATCTTCTAAGCAAGGCAAAAAACTGACTTTACCAGCTAGAAAGCGGAAGAGATTACGCTGGACAACTGAAGAAGAAAATAAACTAAAGGAAGGAGTTTCAAGATTCTCAAAGGAAAACCGGAATATCCCTTGGAGGAAAATTTTAGAATTTGGTTGTGATGTATTTGATACTACACGCACCCCAATTGATCTTAAGGATAAATGGAGGACCATGACAGTGGGGCCAGGACACAGTCGACCTTGGGAGATTTCTGCAGACTAA 1539 0.423 MRTKSHDGGRAKTSTKPSHPTVRAIPRDADGAAVPKISNESNRDLLDVREVDSKDNLDNVIHEGSNRMPHESLGHDNICTDVFDGKICIRCNEGGEVLICSESGCPVTVHAKCISCKPKFDGIGNYYCPYCWLKRTLAEVQVLRKKALTAKKDLSDFLGNSGSMSSKLAQNYGEAGKDSNELSLGGNGSRMDYKSGQENGSACAWSLQRVEDQQKETEGVTSSADQHEIAVEDETHANAEVANTGSMHHVEEKTPEHMDLIDKSMTREKVDHKISEAHKTTFVEGKEGIEPEHPKYSDKSLDEGIPEDEEEVSPSSSYHLGKHKDGPSPDIAIVKGTQESGAVTVDKKDTRQDREKLLQNESRTPSMGTSVSETDDSGSEALLMKKRRVKHMAKRHPQRVMNAEGETGCHKDEEVTSSGTLRRVQKSSKQGKKLTLPARKRKRLRWTTEEENKLKEGVSRFSKENRNIPWRKILEFGCDVFDTTRTPIDLKDKWRTMTVGPGHSRPWEISAD 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3600 512 CDD SANT_TRF 445 498 - -
Prci2g3600 512 MobiDBLite consensus disorder prediction 312 329 - -
Prci2g3600 512 MobiDBLite consensus disorder prediction 342 360 - -
Prci2g3600 512 SMART PHD_3 87 132 IPR001965 -
Prci2g3600 512 SUPERFAMILY FYVE/PHD zinc finger 85 139 IPR011011 -
Prci2g3600 512 MobiDBLite consensus disorder prediction 281 302 - -
Prci2g3600 512 MobiDBLite consensus disorder prediction 170 197 - -
Prci2g3600 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 163 IPR013083 -
Prci2g3600 512 MobiDBLite consensus disorder prediction 397 419 - -
Prci2g3600 512 ProSitePatterns Zinc finger PHD-type signature. 88 131 IPR019786 -
Prci2g3600 512 Pfam Myb-like DNA-binding domain 444 497 IPR001005 -
Prci2g3600 512 MobiDBLite consensus disorder prediction 281 433 - -
Prci2g3600 512 Gene3D - 446 506 - -
Prci2g3600 512 MobiDBLite consensus disorder prediction 1 36 - -
Prci2g3600 512 MobiDBLite consensus disorder prediction 361 377 - -
Prci2g3600 512 SUPERFAMILY Homeodomain-like 445 508 IPR009057 -
Prci2g3600 512 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 43 499 - -
Prci2g3600 512 SMART sant 442 500 IPR001005 -
Prci2g3600 512 ProSiteProfiles Myb-like domain profile. 438 498 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3600 Prci-Chr2 45887647 45892159 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci2g3600 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3600 - - pcin:129302004 1036.17