LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g3598	ATGGATGCAGATGGTGCAGCTGTGCCTAAAATATCCAATGAGAGTAATCGTGATCTGCTAGATGTTAGAGAGGTGGATTCAAAAGACAATTTGGATAATGTAATTCATGAGGGCTCTAATAGAATGCCTCATGAGAGTCTAGGTCATGACAACATTTGTACAGATGTTTTTGATGGAAAGATTTGCATCCGTTGCAATGAAGGTGGAGAAGTATTAATTTGCAGTGAAAGTGGTTGTCCTGTTACTGTCCATGCAAAATGTATCAGCTGCAAACCTAAATTTGATGGTATAGGGAACTACTACTGCCCTTATTGCTGGTTAAAACGAACTTTGGCAGAGGTCCAAGTATTGAGGAAAAAGGCCTTAACAGCGAAGAAAGATTTGTCTGACTTTTTAGGTAACAGTGGGAGCATGAGTAGTAAGTTGGCCCAAAATTACGGGGAAGCAGGAAAAGATTCCAACGAGTTATCCCTTGGGGGAAATGGGAGCCGCATGGATTACAAGAGTGGGCAGGAAAATGGCAGTGCATGCGCATGGTCCTTGCAGAGAGTGGAAGATCAACAAAAAGAAACGGAAGGAGTGACATCTAGTGCTGATCAACATGAAATAGCAGTTGAAGATGAAACTCATGCAAATGCTGAAGTGGCCAATACTGGTTCTATGCATCATGTGGAAGAAAAGACACCAGAGCATATGGATCTGATTGATAAATCCATGACCAGGGAGAAAGTTGATCATAAAATTTCAGAGGCACATAAAACCACTTTTGTTGAAGGAAAAGAGGGGATTGAACCAGAGCATCCAAAATATAGTGATAAAAGCCTTGACGAAGGGATCCCTGAGGATGAAGAGGAAGTATCCCCTTCGAGCTCATACCATTTGGGAAAACACAAAGATGGACCCTCACCTGATATTGCAATTGTCAAAGGGACACAAGAAAGTGGTGCTGTGACTGTAGATAAAAAGGACACAAGGCAAGACAGAGAGAAGTTGCTCCAGAATGAATCAAGGACGCCTTCAATGGGTACTTCTGTCAGTGAAACTGATGATTCAGGTTCTGAAGCTCTCTTAATGAAGAAAAGACGTGTCAAACATATGGCAAAGAGGCATCCTCAGAGAGTTATGAATGCTGAGGGTGAAACTGGTTGTCACAAAGATGAGGAAGTTACCAGTTCTGGAACTTTGAGACGGGTCCAGAAATCTTCTAAGCAAGGCAAAAAACTGACTTTACCAGCTAGAAAGCGGAAGAGATTACGCTGGACAACTGAAGAAGAAAATAAACTAAAGGAAGGAGTTTCAAGATTCTCAAAGGAAAACCGGAATATCCCTTGGAGGAAAATTTTAGAATTTGGTTGTGATGTATTTGATACTACACGCACCCCAATTGATCTTAAGGATAAATGGAGGACCATGACAGTGGGGCCAGGACACAGTCGACCTTGGGAGATTTCTGCAGACTAA	1461	0.4203	MDADGAAVPKISNESNRDLLDVREVDSKDNLDNVIHEGSNRMPHESLGHDNICTDVFDGKICIRCNEGGEVLICSESGCPVTVHAKCISCKPKFDGIGNYYCPYCWLKRTLAEVQVLRKKALTAKKDLSDFLGNSGSMSSKLAQNYGEAGKDSNELSLGGNGSRMDYKSGQENGSACAWSLQRVEDQQKETEGVTSSADQHEIAVEDETHANAEVANTGSMHHVEEKTPEHMDLIDKSMTREKVDHKISEAHKTTFVEGKEGIEPEHPKYSDKSLDEGIPEDEEEVSPSSSYHLGKHKDGPSPDIAIVKGTQESGAVTVDKKDTRQDREKLLQNESRTPSMGTSVSETDDSGSEALLMKKRRVKHMAKRHPQRVMNAEGETGCHKDEEVTSSGTLRRVQKSSKQGKKLTLPARKRKRLRWTTEEENKLKEGVSRFSKENRNIPWRKILEFGCDVFDTTRTPIDLKDKWRTMTVGPGHSRPWEISAD	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g3598	486	MobiDBLite	consensus disorder prediction	255	407	-	-
	Prci2g3598	486	ProSiteProfiles	Myb-like domain profile.	412	472	IPR001005	-
	Prci2g3598	486	SMART	sant	416	474	IPR001005	-
	Prci2g3598	486	MobiDBLite	consensus disorder prediction	335	351	-	-
	Prci2g3598	486	MobiDBLite	consensus disorder prediction	286	303	-	-
	Prci2g3598	486	PANTHER	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	26	473	-	-
	Prci2g3598	486	CDD	SANT_TRF	419	472	-	-
	Prci2g3598	486	Pfam	Myb-like DNA-binding domain	418	471	IPR001005	-
	Prci2g3598	486	SUPERFAMILY	Homeodomain-like	419	482	IPR009057	-
	Prci2g3598	486	ProSitePatterns	Zinc finger PHD-type signature.	62	105	IPR019786	-
	Prci2g3598	486	MobiDBLite	consensus disorder prediction	316	334	-	-
	Prci2g3598	486	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	55	137	IPR013083	-
	Prci2g3598	486	MobiDBLite	consensus disorder prediction	255	276	-	-
	Prci2g3598	486	MobiDBLite	consensus disorder prediction	144	171	-	-
	Prci2g3598	486	SMART	PHD_3	61	106	IPR001965	-
	Prci2g3598	486	MobiDBLite	consensus disorder prediction	371	393	-	-
	Prci2g3598	486	SUPERFAMILY	FYVE/PHD zinc finger	59	113	IPR011011	-
	Prci2g3598	486	Gene3D	-	420	480	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g3598	Prci-Chr2	45880072	45892159	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Prci2g3598		Myb_DNA-binding	1.3e-06	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g3598	-		-	pcin:129302004	986.482