Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3596 ATGTTAAATCGAAGTGGTGGAAGAGATCGGTTTAGAAGGGATTACCCTTCAAGATTTGAAGATAAAGGTAGCAGTGGGCGGAGCAACAGCAGCAACCCCCCTTCCAGGCATCTTTGGGTTGGGAATCTAGCACACAGTATATCAGAGAATGAACTTGCCCGTCATTTTCTACAATTTGGACCACTTGAGAGTGTTGCATTTCAGCCTGGTCGTAGTTATGCTTTCATCAATTTCAGAAGGGATGAGGATGCTATTGATGCCATGGCAGAACTTCAAGGTTTTCCTGTTTCAGGCAACCCGCTTAGAATTGAGTTTGCCAAGGCGGATAAGCCATCTTCACTAACACGTGATGAAGACCACTCTTGGGATGAACGAAGCTCAGGGAGAAGAGGATCTCCTTTCACTCAAAGAGAGTTTAGAGGACGCCATGGTAGTCCTGAGCCTCCTTATCCCGACAAATCCAAGCTGACTGATAAAAACCCAGAACCCAGTGAGGTTTTGTGGATAGGATTTCCATCTCAATTGAACGTGGATGATTTAGCCTTGAGAAAGGCTTTTTCTCCATTTGGTGAGATTGAGAAGATCACAACATTTCCAGGTCGTAGTTATGCTTTTGTTCGTTTTAGGAGTCTAACTTCAGCACGCAGAGCAAGAGATTCTCTGCAGGGAAAGTTATTTGGAAATCCACGCGTACATATTTGTTTTGCAAAGAGTGAAGCTGGTTCATCAAGCAGTGGAAGGTTTTCAATTAATTCCCCTTCATCCCCATTTTATGCATCTAGCGGTCGTCATGGATCAATTGAGAACTTGAGAAAAGATAGGAGTATCATGGGCTTTAGTGGAGACCGTAGTGGTAGTTCCCCTGATATATTCCCAAAATGGGACTTGGCAGATTCTGATGCTTATGATTCAGATAGAAGGGGCTCTTCACGGGCTAGTGGATTCACTTCATATGAACAAAGGAGAGTTGGTGAAAAGTTGCCACCCCTTGGAGTACTACAAGAAAGTTTTGGACACTCAAGAAGTCCTTCTAGAGATAGACAAGCTCATTTGGGTACTTTTCCTCAAAGATTTCCTCAAAAGCATGCATTATTTGAAGATCCACGGGACTTGCCAGATGATCTGTATTATCAACATGACGCTAAAAAGCTGAAGACTGTATCTCTTCCTTCTGAAAAAGAGCTTCCAGAGTATCCTCTTTCTGATTTAGAAAGGCAGAGGCATATGTTCCCAAGGTTATTAACTGATTTGCCCCAACATGAGGTCCTTGATAACAGAATTGATGCTGGACCTGTTGTGCATAGACAAACTTTTGATCCCAAACCAAATTCCCCTTTTGCTCGGTCAGATCGAAGTGAGCACCGGAATCCTAATGATAGTTTCCGCATGGGTGCCAGTTCTCTGCAATCACATTCTATTGAGAAAAGAAGACTCACACCTGAACCTAGTAACTCATCCTTAACTGAGTGGAAATGGGAAGGAACCATTGCCAAAGGTGGAACACCTGTTTGTCGTGCTCGCTGCTTCCCTGTGGGAAAAGTCCTGGATATCATGTTACCTGAATTCTTGGATTGCACAGCGAGGACTGGTCTAGACATGCTTTCAAAGCATTATTACCAAGCGGCTGGTGCTTGGGTTGTTTTCTTTGTGCCTGAAAGCGATGTTGACATTGAATACTACAATGAATTCATGCATTACCTGGGGGAGAAGCGTAGGGCTGCAGTTGCTAAGTTAGATGACAGAAACACCTTGTTTCTTGTACCTCCATCAGATTTCTCAGAGAAAGTATTGAAGGTACCTGGAAAGTTGAGTATATCTGGTGTGGTTCTAAGGTTGGAGCATCCGGGTTCTACTCAAGGGTCCATGCACAATGAAAATGAATTGAGTGCATTGTATCCAAAGCCACCAATGCCATCAGCTCATAGCCCCCCACAATTTACATCTATTCCTGAATTGGGTGCATCGGGGATGAGCAATCTTTCGTTCCTTGGAAATAAGATTTCAGCAGCTCTGCCTACCGGACCTGCCATGGCTGGTGTATCTGGTTCTCATGATGGAAGAAGGGGACACGAGTATCCTGCTCAACAGCAGAACAATACATCTGGGCCAAATTGGTCTGCCAACAATCTTCAGACCTTGATCTCCAATAGAAATTTACCATTACAATTGTCAACTGGTGCTGTTGAACCTCTTGCTCAGGATCAGCAGCAGGACATTCAGAGGTCAGTGCTTGATGTCAATTCAAACCAACGTGTCGGTGAAAACAAGTCATCTCTTCAGGAAATAAGGCCTCTGGATTCTTTATCTCTGCCTGGTGGATCCCTCCAACAAGAGCAGCTCGCACAACTAGCAGCATCTCTTCTTGAGCAGCAGAGGCAATCAGGGAGCGGTCTTAGTGTATCTGCGGCGTCACATGATCCGAGGCAAATTCATAGAGTTAACGGGTCTGACTCCTCCTCCAGATCATCCCAAAAATACCCCATTCAAAATAACTCAGTGAATCCTGAACTCGCAACAGCTCAGTATGGTCAAGTTCTACAGATTCAAAAGCAACAGCAGATGTCAAATGTGCCTCAAGGATCACAGATGGTTCAAAGAGAGCCACAAAGAGTGACTAACGGAAATCAGCAACAGCTAACTGGAAGTAACATGCAGCAAGATGCAGAAGCTGATCCACAGAAGCGTCTACAAGCGACATTACAGCTGGCTGCAGTTCTTCTTCAGCAAATTCAGCAAGGGAAAGGAAGTTGA 2751 0.4453 MLNRSGGRDRFRRDYPSRFEDKGSSGRSNSSNPPSRHLWVGNLAHSISENELARHFLQFGPLESVAFQPGRSYAFINFRRDEDAIDAMAELQGFPVSGNPLRIEFAKADKPSSLTRDEDHSWDERSSGRRGSPFTQREFRGRHGSPEPPYPDKSKLTDKNPEPSEVLWIGFPSQLNVDDLALRKAFSPFGEIEKITTFPGRSYAFVRFRSLTSARRARDSLQGKLFGNPRVHICFAKSEAGSSSSGRFSINSPSSPFYASSGRHGSIENLRKDRSIMGFSGDRSGSSPDIFPKWDLADSDAYDSDRRGSSRASGFTSYEQRRVGEKLPPLGVLQESFGHSRSPSRDRQAHLGTFPQRFPQKHALFEDPRDLPDDLYYQHDAKKLKTVSLPSEKELPEYPLSDLERQRHMFPRLLTDLPQHEVLDNRIDAGPVVHRQTFDPKPNSPFARSDRSEHRNPNDSFRMGASSLQSHSIEKRRLTPEPSNSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDIMLPEFLDCTARTGLDMLSKHYYQAAGAWVVFFVPESDVDIEYYNEFMHYLGEKRRAAVAKLDDRNTLFLVPPSDFSEKVLKVPGKLSISGVVLRLEHPGSTQGSMHNENELSALYPKPPMPSAHSPPQFTSIPELGASGMSNLSFLGNKISAALPTGPAMAGVSGSHDGRRGHEYPAQQQNNTSGPNWSANNLQTLISNRNLPLQLSTGAVEPLAQDQQQDIQRSVLDVNSNQRVGENKSSLQEIRPLDSLSLPGGSLQQEQLAQLAASLLEQQRQSGSGLSVSAASHDPRQIHRVNGSDSSSRSSQKYPIQNNSVNPELATAQYGQVLQIQKQQQMSNVPQGSQMVQREPQRVTNGNQQQLTGSNMQQDAEADPQKRLQATLQLAAVLLQQIQQGKGS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3596 916 SUPERFAMILY RNA-binding domain, RBD 154 239 IPR035979 GO:0003676
Prci2g3596 916 Gene3D - 19 114 IPR012677 -
Prci2g3596 916 MobiDBLite consensus disorder prediction 301 321 - -
Prci2g3596 916 CDD SPOC_FPA-like 491 610 - -
Prci2g3596 916 MobiDBLite consensus disorder prediction 109 160 - -
Prci2g3596 916 PANTHER RNA RECOGNITION MOTIF-CONTAINING 26 910 - -
Prci2g3596 916 Gene3D - 152 245 IPR012677 -
Prci2g3596 916 SUPERFAMILY RNA-binding domain, RBD 23 113 IPR035979 GO:0003676
Prci2g3596 916 MobiDBLite consensus disorder prediction 851 893 - -
Prci2g3596 916 MobiDBLite consensus disorder prediction 745 765 - -
Prci2g3596 916 MobiDBLite consensus disorder prediction 433 486 - -
Prci2g3596 916 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 108 IPR000504 GO:0003723
Prci2g3596 916 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 238 IPR000504 GO:0003723
Prci2g3596 916 CDD RRM_SF 38 104 - -
Prci2g3596 916 MobiDBLite consensus disorder prediction 851 892 - -
Prci2g3596 916 MobiDBLite consensus disorder prediction 813 829 - -
Prci2g3596 916 FunFam RNA recognition motif (RRM)-containing protein 151 244 - -
Prci2g3596 916 SMART rrm1_1 166 234 IPR000504 GO:0003723
Prci2g3596 916 SMART rrm1_1 37 104 IPR000504 GO:0003723
Prci2g3596 916 MobiDBLite consensus disorder prediction 795 829 - -
Prci2g3596 916 CDD RRM_SF 167 233 - -
Prci2g3596 916 MobiDBLite consensus disorder prediction 337 361 - -
Prci2g3596 916 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 101 IPR000504 GO:0003723
Prci2g3596 916 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 230 IPR000504 GO:0003723
Prci2g3596 916 MobiDBLite consensus disorder prediction 676 708 - -
Prci2g3596 916 MobiDBLite consensus disorder prediction 1 21 - -
Prci2g3596 916 Pfam SPOC domain 485 600 IPR012921 -
Prci2g3596 916 MobiDBLite consensus disorder prediction 108 161 - -
Prci2g3596 916 MobiDBLite consensus disorder prediction 1 35 - -
Prci2g3596 916 MobiDBLite consensus disorder prediction 692 708 - -
Prci2g3596 916 MobiDBLite consensus disorder prediction 459 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3596 Prci-Chr2 45857446 45871767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3596 34 318 Eukaryotic Initiation Factors Gene Family AT1G71770 24.068 8.08e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3596 - - gmx:100811668 1056.2