Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci2g3540 | ATGGAAACTGAAAATTCAGATGTGTCAAAGGCTGAAGAATTCAAAGTCCTTGCAAACGAAGCCTTCAATGCTCGCAAATATGCCCAAGCTATTGATTTATATACTCAGGCAATTGAACTGAACAGTCGAAATGCTGTTTACTGGGCTAATCGTGCATTTGCACATCTTAGGCTTGAGGAATATGGTAGTGCGATACAAGATGCTACAAAGGCCATTGAAGTTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCTCATCTTGGCATGGGGAAATTCAAGGAAGCACTGAAGGATTTTCAGCAGGTCAAGAAAATGTGCCCAAATGACCCTGATGCAACAAAGAAATTAAAGGAATGTGAAAAGGCAGTTATGAAACTTAAATTTGAAGAAGCAATTTCTGCCCCAGATGCTGAAAGGCGTTCAGTAGCTGAATCCATCGATTTCCACTCTATAGATGTGGAGCCGCAATACACAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAGATGATGGATGATTTTAAGAATCAAAAGTGCCTACATAAACGGTATGCCTACCAAATTGTATTGCAAACGAGAGAGATGTTGTTAACCTTGCCTCCTCTTGTTGATATAAATGTTCCTGATGGCAAGCATTTCACTGTTTGCGGTGATGTGCATGGTCAGTACTACGATCTCTTGAACATCTTTGAGCTTAATGGGCTTCCCTCGGAAGAGAATCCATACCTTTTTAATGGTGACTTTGTGGATAGAGGATCTTTTTCACTGGAAGTCATCCTCACTTTGTTTGCATTCAAGTGCATGTCTCCATCAGCCATATATCTAGCTAGAGGGAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTCCGCTCAAAGTTAAGCGACACATTTGTGGAACTATTTGCAGAAGTCTTCTGCTGTTTACCTTTGGCTCATGTGATAAACGGGAAGGTTTTTGTGGTTCATGGAGGTCTTTTTAGTGTTGATGGGGTCAAACTCTCTGACATTAGAGCAATTAACCGATTTTGTGAGCCTCCAGAAGAAGGATTAATGTGCGAATTGCTATGGAGTGATCCACAACCTCTTCCTGGGCGGGGTCCAAGCAAGCGTGGTGTAGGTCTTTCTTTTGGTCCCGACGTGACAAAAAGTTTTCTGAAGGAAAATAATTTAGAGTTGGTTGTCAGATCTCATGAGGTAAAGGATGAGGGTTATGAGATCGAACATGATGGTAAACTCATAACTGTATTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCATTCATTCGATTTGAAGCACCGGATTTGAAGCCAAACATTGTTACGTACTCAGCAGTGCCACACCCGGATGTGAAGCCAATGGCTTATGCGAACAACTTCCTTCGGATGTTCTCATAA | 1449 | 0.4168 | METENSDVSKAEEFKVLANEAFNARKYAQAIDLYTQAIELNSRNAVYWANRAFAHLRLEEYGSAIQDATKAIEVDPKYSKGYYRRGAAHLGMGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAISAPDAERRSVAESIDFHSIDVEPQYTGARIEGDVVTLDFVKKMMDDFKNQKCLHKRYAYQIVLQTREMLLTLPPLVDINVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLSDTFVELFAEVFCCLPLAHVINGKVFVVHGGLFSVDGVKLSDIRAINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGPDVTKSFLKENNLELVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTYSAVPHPDVKPMAYANNFLRMFS | 482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci2g3540 | 482 | ProSiteProfiles | TPR repeat profile. | 79 | 112 | IPR019734 | GO:0005515 | |
| Prci2g3540 | 482 | ProSiteProfiles | TPR repeat profile. | 45 | 78 | IPR019734 | GO:0005515 | |
| Prci2g3540 | 482 | Pfam | Calcineurin-like phosphoesterase | 220 | 414 | IPR004843 | GO:0016787 | |
| Prci2g3540 | 482 | PIRSF | PPPtase_5 | 1 | 482 | - | - | |
| Prci2g3540 | 482 | ProSiteProfiles | TPR repeat profile. | 11 | 44 | IPR019734 | GO:0005515 | |
| Prci2g3540 | 482 | SMART | tpr_5 | 11 | 44 | IPR019734 | GO:0005515 | |
| Prci2g3540 | 482 | SMART | tpr_5 | 79 | 112 | IPR019734 | GO:0005515 | |
| Prci2g3540 | 482 | SMART | tpr_5 | 45 | 78 | IPR019734 | GO:0005515 | |
| Prci2g3540 | 482 | FunFam | Serine/threonine-protein phosphatase 5 | 1 | 138 | - | - | |
| Prci2g3540 | 482 | PANTHER | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED | 43 | 475 | - | - | |
| Prci2g3540 | 482 | SUPERFAMILY | TPR-like | 8 | 136 | IPR011990 | GO:0005515 | |
| Prci2g3540 | 482 | Gene3D | - | 134 | 481 | IPR029052 | - | |
| Prci2g3540 | 482 | PRINTS | Serine/threonine phosphatase family signature | 250 | 277 | IPR006186 | GO:0016787 | |
| Prci2g3540 | 482 | PRINTS | Serine/threonine phosphatase family signature | 220 | 247 | IPR006186 | GO:0016787 | |
| Prci2g3540 | 482 | PRINTS | Serine/threonine phosphatase family signature | 403 | 423 | IPR006186 | GO:0016787 | |
| Prci2g3540 | 482 | PRINTS | Serine/threonine phosphatase family signature | 317 | 343 | IPR006186 | GO:0016787 | |
| Prci2g3540 | 482 | PRINTS | Serine/threonine phosphatase family signature | 347 | 374 | IPR006186 | GO:0016787 | |
| Prci2g3540 | 482 | PRINTS | Serine/threonine phosphatase family signature | 425 | 441 | IPR006186 | GO:0016787 | |
| Prci2g3540 | 482 | PRINTS | Serine/threonine phosphatase family signature | 283 | 307 | IPR006186 | GO:0016787 | |
| Prci2g3540 | 482 | Pfam | Tetratricopeptide repeat | 80 | 112 | IPR001440 | GO:0005515 | |
| Prci2g3540 | 482 | FunFam | Serine/threonine-protein phosphatase 5 | 139 | 481 | - | - | |
| Prci2g3540 | 482 | Pfam | PPP5 TPR repeat region | 119 | 212 | IPR013235 | - | |
| Prci2g3540 | 482 | SMART | pp2a_7 | 188 | 464 | IPR006186 | GO:0016787 | |
| Prci2g3540 | 482 | Gene3D | Tetratricopeptide repeat domain | 3 | 133 | IPR011990 | GO:0005515 | |
| Prci2g3540 | 482 | Pfam | Tetratricopeptide repeat | 17 | 78 | - | - | |
| Prci2g3540 | 482 | CDD | MPP_PP5_C | 160 | 475 | IPR041753 | - | |
| Prci2g3540 | 482 | SUPERFAMILY | Metallo-dependent phosphatases | 156 | 476 | IPR029052 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci2g3540 | Prci-Chr2 | 45416019 | 45424782 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci2g3540 | 220 | 407 | Calmodulin-binding Proteins | AT5G63870 | 37.387 | 1.61e-41 | 148 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci2g3540 | K04460 | - | aew:130790041 | 893.649 |