Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3492 ATGCGAATATTTAATAAGGTCCACGAAGAAGTTGGGGGATATGATCCACTTGAAGATGTTGAAACCAATGCTATTGGAAACATGCTTCCTGATGATGAAGAAGAGCTATTAGCTGGCATAATGGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGAGGATCTGGATGAAAATGATTTATTTGGTAGTGGAGGAGGGTTAGAAATGGATTTTGAAGAGAGTCTTAAGACTGGCATGTCAAAAATGAGCGTTAGTGATGGGCTTGCTTCAAATGGTATTGGCCATTATGTGCTTCCGAATGGTGTAGGACCTGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGAACGTTATTTGTGAGAAACATCAATAGTAACGTTGAGGATTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATCAGAACTTTATACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGAGATGCTCGAACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGACAACCCTTCTGAGAAGGACATCAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGACGATCTTCGTCTAATATTTGGGGTTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACATCATAAATTTATTGAATTTTACGATGTTAGAGCAGCTGAGGCCGCACTTAAGGCATTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGGGCACGTCGAAATTTGATGCAACAACTTAGTCAAGAGCTGGACCTAGATGAAGCACGGACATTTAGACATCAAGTAGGTTCGCCACTGGCCAATTCTCCTCCTGGTAACTGGACGCAATTTGGCAGTCCAGTTGAACATAGTTATTTAAGTTCTTTTAGCAAGTCTCCTGCTTTTAGTCATGCCAGCCCAGTGAATAGCAACCATTCTTCTGGATTGGCCGCAATTCTCTCCCCTCATGCATCAAACTCTACCAAGATTGCTCCAATTGGCAAGGACTCTGGAAGAGTTAATAGTTCAAATCAGATATTTACAAATGCAGTATCAACACAAGGAGTAGCTTTTCAGAATTCACTGTCTTTTCCCGAGCTAAAAGCAAATGCAAGTTCTAGACCCATTGCTACTTTTGGTGAATCAAGCTCAAGTTCATCAAGCATTGGAACACTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTACTTCTTACACAGAGCATTCAAGTACTTCTGCGTGGTCTTCTTCTGCTAAGGTCCCTTTTACATCTGGCGGTGAGAAGCAGGGTTTCCCATATCCTAATCGACACAGTTCCTTTCTTGGTTCCCGCTCCCTTCATCATGTGGGATCTGCTCCATCTGGCCTCCCTCTTGAGAGGCATTTTAACTATTTCCCAGATTCACCCGAAGCTTCTTTCATGAGTCCAGTTTCATATGGGAGTATAAATCAGAGTGATGGGAATTTTATGAACATGGGTTCTCGAGCAGCTACTGGGCTTATTGGCCTTTCAGGAAATACAACTGAAATTAGTTCACCTAGTTTCAGGTTGATGTCACTACCCAGGCACAGTTCCTTGTTTCTTGGAAATGGTTCTTATTCTGGGGTGGTTGCAAATAATGAAGGGTTTACTGAACTTGGTCGGAGTCGGCGACCTGAAAATAGTGTGACCCAAATTGATGCCAAGAAGCAGTATCAACTTGATCTTGACAAAATTATCGGTGGGGAAGATGCAAGGACTACTTTAATGATTAAAAACATTCCTAATAAGTACACCTCAAAGATGTTGCTATCTGCAATTGATGAGAACCACCGGGGTACTTATGACTTTCTCTACTTGCCCATTGACTTCAAGAACAAATGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTGCTTCACATATTGTTCCCTTCTATAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGTGAAAAAGTTGCGTCACTGGCTTATGCACGGATCCAAGGAAAGGCTGCACTTGTGACACACTTCCAAAATTCAAGCTTAATGAACGAGGATAAGCGATGCAGGCCAATTCTCTTTCATTCAGAGGGCCAAGAGACTGCTGACCAGGGACCTTTCTTCTCCAGCAATTTGAATATTTGCATCCGTCAGCCAGATGGGTCATACTCAGGAGATATGTTGGAAAGCCCTAAGGGCGATTTGGATGACAAGCTGTAG 2316 0.4218 MRIFNKVHEEVGGYDPLEDVETNAIGNMLPDDEEELLAGIMDDFDLSRLPSQLEDLDENDLFGSGGGLEMDFEESLKTGMSKMSVSDGLASNGIGHYVLPNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGVYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRNLMQQLSQELDLDEARTFRHQVGSPLANSPPGNWTQFGSPVEHSYLSSFSKSPAFSHASPVNSNHSSGLAAILSPHASNSTKIAPIGKDSGRVNSSNQIFTNAVSTQGVAFQNSLSFPELKANASSRPIATFGESSSSSSSIGTLSGPQFLWGSPTTSYTEHSSTSAWSSSAKVPFTSGGEKQGFPYPNRHSSFLGSRSLHHVGSAPSGLPLERHFNYFPDSPEASFMSPVSYGSINQSDGNFMNMGSRAATGLIGLSGNTTEISSPSFRLMSLPRHSSLFLGNGSYSGVVANNEGFTELGRSRRPENSVTQIDAKKQYQLDLDKIIGGEDARTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSASHIVPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETADQGPFFSSNLNICIRQPDGSYSGDMLESPKGDLDDKL 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3492 771 Gene3D - 107 201 IPR012677 -
Prci2g3492 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 191 IPR000504 GO:0003723
Prci2g3492 771 FunFam MEI2-like protein 5 isoform 2 107 201 - -
Prci2g3492 771 SUPERFAMILY RNA-binding domain, RBD 115 278 IPR035979 GO:0003676
Prci2g3492 771 CDD RRM1_MEI2_like 117 193 IPR034453 -
Prci2g3492 771 Gene3D - 202 300 IPR012677 -
Prci2g3492 771 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 270 IPR000504 GO:0003723
Prci2g3492 771 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 184 IPR000504 GO:0003723
Prci2g3492 771 FunFam Protein MEI2-like 1 202 297 - -
Prci2g3492 771 CDD RRM3_MEI2_like 617 702 IPR034454 -
Prci2g3492 771 CDD RRM2_MEI2_like 202 272 - -
Prci2g3492 771 Pfam RNA recognition motif 2 614 710 IPR007201 -
Prci2g3492 771 SUPERFAMILY RNA-binding domain, RBD 616 701 IPR035979 GO:0003676
Prci2g3492 771 SMART rrm1_1 119 187 IPR000504 GO:0003723
Prci2g3492 771 SMART rrm1_1 204 272 IPR000504 GO:0003723
Prci2g3492 771 SMART rrm1_1 616 692 IPR000504 GO:0003723
Prci2g3492 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 276 IPR000504 GO:0003723
Prci2g3492 771 PANTHER RNA RECOGNITION MOTIF-CONTAINING 106 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3492 Prci-Chr2 44759077 44767733 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3492 115 269 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 4.11e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3492 - - gmx:100812324 1242.64