LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g3490	ATGGAGTCAGAGGATAAGCATCCTTTGGATTCTAAGTCAGCCAGCGGGTCTGCAGGTCCATCGGGGATTTCTCCACTTAATGTTGCTGAAAAAGTGGAAAGCAGTGCTTGGGGGATACAACATGGAGCTAGTGTGCATCATGCATCTGGTGATGCTAGCTTGTTTTCTAGTTCTCTTCCTGTTCTTCCACATGAAAATTCGAATTTCCCTGATTCAGTGCGTTACGGCCAACCTTTTGAGGATAACATGCGAATATTTAATAAGGTCCACGAAGAAGTTGGGGGATATGATCCACTTGAAGATGTTGAAACCAATGCTATTGGAAACATGCTTCCTGATGATGAAGAAGAGCTATTAGCTGGCATAATGGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGAGGATCTGGATGAAAATGATTTATTTGGTAGTGGAGGAGGGTTAGAAATGGATTTTGAAGAGAGTCTTAAGACTGGCATGTCAAAAATGAGCGTTAGTGATGGGCTTGCTTCAAATGGTATTGGCCATTATGTGCTTCCGAATGGTGTAGGACCTGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGAACGTTATTTGTGAGAAACATCAATAGTAACGTTGAGGATTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATCAGAACTTTATACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGAGATGCTCGAACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCTAAGGACAACCCTTCTGAGAAGGACATCAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGACGATCTTCGTCTAATATTTGGGGTTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACATCATAAATTTATTGAATTTTACGATGTTAGAGCAGCTGAGGCCGCACTTAAGGCATTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGGGCACGTCGAAATTTGATGCAACAACTTAGTCAAGAGCTGGACCTAGATGAAGCACGGACATTTAGACATCAAGTAGGTTCGCCACTGGCCAATTCTCCTCCTGGTAACTGGACGCAATTTGGCAGTCCAGTTGAACATAGTTATTTAAGTTCTTTTAGCAAGTCTCCTGCTTTTAGTCATGCCAGCCCAGTGAATAGCAACCATTCTTCTGGATTGGCCGCAATTCTCTCCCCTCATGCATCAAACTCTACCAAGATTGCTCCAATTGGCAAGGACTCTGGAAGAGTTAATAGTTCAAATCAGATATTTACAAATGCAGTATCAACACAAGGAGTAGCTTTTCAGAATTCACTGTCTTTTCCCGAGCTAAAAGCAAATGCAAGTTCTAGACCCATTGCTACTTTTGGTGAATCAAGCTCAAGTTCATCAAGCATTGGAACACTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTACTTCTTACACAGAGCATTCAAGTACTTCTGCGTGGTCTTCTTCTGCTAAGGTCCCTTTTACATCTGGCGGTGAGAAGCAGGGTTTCCCATATCCTAATCGACACAGTTCCTTTCTTGGTTCCCGCTCCCTTCATCATGTGGGATCTGCTCCATCTGGCCTCCCTCTTGAGAGGCATTTTAACTATTTCCCAGATTCACCCGAAGCTTCTTTCATGAGTCCAGTTTCATATGGGAGTATAAATCAGAGTGATGGGAATTTTATGAACATGGGTTCTCGAGCAGCTACTGGGCTTATTGGCCTTTCAGGAAATACAACTGAAATTAGTTCACCTAGTTTCAGGTTGATGTCACTACCCAGGCACAGTTCCTTGTTTCTTGGAAATGGTTCTTATTCTGGGGTGGTTGCAAATAATGAAGGGTTTACTGAACTTGGTCGGAGTCGGCGACCTGAAAATAGTGTGACCCAAATTGATGCCAAGAAGCAGTATCAACTTGATCTTGACAAAATTATCGGTGGGGAAGATGCAAGGACTACTTTAATGATTAAAAACATTCCTAATAAGTACACCTCAAAGATGTTGCTATCTGCAATTGATGAGAACCACCGGGGTACTTATGACTTTCTCTACTTGCCCATTGACTTCAAGAACAAATGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTGCTTCACATATTGTTCCCTTCTATAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGTGAAAAAGTTGCGTCACTGGCTTATGCACGGATCCAAGGAAAGGCTGCACTTGTGACACACTTCCAAAATTCAAGCTTAATGAACGAGGATAAGCGATGCAGGCCAATTCTCTTTCATTCAGAGGGCCAAGAGACTGCTGACCAGGGACCTTTCTTCTCCAGCAATTTGAATATTTGCATCCGTCAGCCAGATGGGTCATACTCAGGAGATATGTTGGAAAGCCCTAAGGGCGATTTGGATGACAAGCTGTAG	2562	0.4254	MESEDKHPLDSKSASGSAGPSGISPLNVAEKVESSAWGIQHGASVHHASGDASLFSSSLPVLPHENSNFPDSVRYGQPFEDNMRIFNKVHEEVGGYDPLEDVETNAIGNMLPDDEEELLAGIMDDFDLSRLPSQLEDLDENDLFGSGGGLEMDFEESLKTGMSKMSVSDGLASNGIGHYVLPNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGVYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRNLMQQLSQELDLDEARTFRHQVGSPLANSPPGNWTQFGSPVEHSYLSSFSKSPAFSHASPVNSNHSSGLAAILSPHASNSTKIAPIGKDSGRVNSSNQIFTNAVSTQGVAFQNSLSFPELKANASSRPIATFGESSSSSSSIGTLSGPQFLWGSPTTSYTEHSSTSAWSSSAKVPFTSGGEKQGFPYPNRHSSFLGSRSLHHVGSAPSGLPLERHFNYFPDSPEASFMSPVSYGSINQSDGNFMNMGSRAATGLIGLSGNTTEISSPSFRLMSLPRHSSLFLGNGSYSGVVANNEGFTELGRSRRPENSVTQIDAKKQYQLDLDKIIGGEDARTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSASHIVPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETADQGPFFSSNLNICIRQPDGSYSGDMLESPKGDLDDKL	853

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g3490	853	Gene3D	-	284	382	IPR012677	-
	Prci2g3490	853	SUPERFAMILY	RNA-binding domain, RBD	197	360	IPR035979	GO:0003676
	Prci2g3490	853	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	202	266	IPR000504	GO:0003723
	Prci2g3490	853	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	287	352	IPR000504	GO:0003723
	Prci2g3490	853	FunFam	MEI2-like protein 5 isoform 2	189	283	-	-
	Prci2g3490	853	CDD	RRM1_MEI2_like	199	275	IPR034453	-
	Prci2g3490	853	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	12	814	-	-
	Prci2g3490	853	SUPERFAMILY	RNA-binding domain, RBD	698	783	IPR035979	GO:0003676
	Prci2g3490	853	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	200	273	IPR000504	GO:0003723
	Prci2g3490	853	MobiDBLite	consensus disorder prediction	1	26	-	-
	Prci2g3490	853	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	285	358	IPR000504	GO:0003723
	Prci2g3490	853	SMART	rrm1_1	286	354	IPR000504	GO:0003723
	Prci2g3490	853	SMART	rrm1_1	201	269	IPR000504	GO:0003723
	Prci2g3490	853	SMART	rrm1_1	698	774	IPR000504	GO:0003723
	Prci2g3490	853	FunFam	Protein MEI2-like 1	284	379	-	-
	Prci2g3490	853	CDD	RRM3_MEI2_like	699	784	IPR034454	-
	Prci2g3490	853	Gene3D	-	189	283	IPR012677	-
	Prci2g3490	853	Pfam	RNA recognition motif 2	696	792	IPR007201	-
	Prci2g3490	853	CDD	RRM2_MEI2_like	284	354	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g3490	Prci-Chr2	44759077	44767735	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g3490	197	351	Eukaryotic Initiation Factors Gene Family	AT1G71770	26.829	5.15e-11	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g3490	-		-	gmx:100812324	1330.08