Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3471 ATGTTAGGATTTTCTCTGGGTCCAAGAGAAGATACCATCACGATGGCTTTGAAGGTTTCTCTTGTTCTGGTTCTAATTGTAATGTGTTCCTGCGCTGTGGATGCGATTTCTGGGAATAACAACCAGAACTGTCTCAACAAAAATGGCTCTTCTCTCGCTGCCATCAAAATGCCTGATCATCCAAACATCAATACTGTGTCTTCTTCTGCAGATAGTGACTGTAGCTTCTCAAACTCCGAGAAATTTGAGCATTCAGGAGTAACCACATCAGATGAAGATGCTGATGACAGTTATGTAGCAAAACGACTCAAGCAATTGCTAAAGCTCAATCTGAAACGCCGACCGGTGATGGTGAATGAAGATGCTGAACCAAGAAAATCTATGATTGATTTCACAGTTCGGGATTTAACCAGAATCCAGACCCTTCATAGAAGGGTCATAGAGAAGAAGAATCAAAACACTGTTTCAAGGCTGCAGAAAATACAGCCCAAATCAAAGCACCAACTGTATGAGCAGGTTGTTACTCCGGCACCGGCACCGGCACCGGCACCGGCATATTTTGCAAATGAGCATCCAGGCCGGCTTGTGGCAACATTGGAATCAGGGGCCAGTTTTGGGTCTGGAGAGTACTTCATGGATGTGTTTGTGGGCACACCTCCTAAGCATTTCTCTTTGATACTTGATACGGGTAGCGATCTTAATTGGATTCAATGCGTTCCTTGTTATGTTTGTTTTGAGCAAAGTGGACCTCACTATGATCCTAAAGATTCCAGTTCCTTCAAGAACATAAGCTGCCATGATCAACGGTGCCAATTAGTGTCATCCCCAGATCCACCTCAGGCTTGCAAGGCTGAGAACCAGACCTGCCCTTACTTCTACTGGTATGGAGATAGCTCCAATACAACTGGGGATTTTGCACTTGAGACTTTTACAGTTAATCTCACAGCATCTTCAGGGAAGTCTGAGTTCAGGCGTGTGGAGGATGTAATGTTTGGCTGTGGACATTGGAATAGAGGTCTCTTCCATGGAGCTGCGGGTTTGCTAGGATTAGGAAGAGGGCCATTGTCATTTGCTTCTCAGCTTCAATCTCTTTATGGCCACTCCTTTTCCTATTGTCTTGTGGATAGAAACAGTAACATTAGCAGCAAACTGATATTTGGAGAAGACAAGAAACTTCTCAGAAACCCAAACTTGAATTTCACTTCATTTGTGGGTGGGAAAGAAAACCCAGTTGATACATTTTACTATGTGCAGATCAAATCTGTCATTGTCGGTGGTGAAGTACTGAATATACCAAAGGAAACTTGGCTTGCATCTGCAGGTGGTGGTGGAGGAACCATCATTGATTCTGGCACTACTCTGACTTATTTTGCAGAGCCTGCTTATGAGATCATCAAAGAGGCTTTCATGAAGAAGATCAAGGGCTACCTTATGATTGAAGATGGCCATCTTCCATTAAAGCCATGTTATAATGTTTCTGGGTTTGAAGCTATTGAGCTACCTAATTTTGGGATCATGTTTGCAGACGGAGCTGTTTGGGATTTCCCAGCGGAAAATTACTTCATTGAGATTGAACCAGGTAGTGTTGTTTGTTTGGCAATTCTGGGCACTCCTCATTCAGCTCTCTCCATAATTGGAAACTATCAGCAGCAGAACTTTCACATCCTCTACGATCTCAAGAATTCCAGACTCGGATATGCACCAGTCAATTGCGCTGATTCTTATGCACTGTTCTTTTGCTTCTTCCCCTTTCGTCCATCGTCTCAAATGGTTTCTTTCAGGTTTCACCAGTACCAGGTGGTGGGAAGGGCCCTTCCCACTGAGACAGATGAGCACCCCAAGATCTACCGTATGAAGCTTTGGGCCACCAATGAGGTCCGTGCGAAGTCCAAGTTCTGGTATTTCTTGAGAAAGCTGAAGAAGGTTAAGAAAAGCAATGGGCAAGTGCTAGCCATTAACGAGATTTTTGAGAAGAACCCTACCAAGATTAAGAACTACGGTATTTGGCTGCGTTATCAAAGTCGAACTGGTTATCATAACATGTACAAGGAATACCGAGATACCACTCTTAATGGTGCCGTTGAACAGATGTACAATGAAATGGCATCACGTCACCGGGTGAGGTTTCCATGCATCCAGATCATCAAGACAGCCACCATCCCTGCAAAGCTGTGCAAAAGAGAGAGCACCAAGCAGTTCCACAATTCTAAAATTAAGTTCCCATTGGTGTTCAGGAAGGTCAGGCCACCAAGTAGGAAGCTGAAGACAACTTACAAGGCATCAAGGCCCAACTTGTTTATGTGA 2304 0.441 MLGFSLGPREDTITMALKVSLVLVLIVMCSCAVDAISGNNNQNCLNKNGSSLAAIKMPDHPNINTVSSSADSDCSFSNSEKFEHSGVTTSDEDADDSYVAKRLKQLLKLNLKRRPVMVNEDAEPRKSMIDFTVRDLTRIQTLHRRVIEKKNQNTVSRLQKIQPKSKHQLYEQVVTPAPAPAPAPAYFANEHPGRLVATLESGASFGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCYVCFEQSGPHYDPKDSSSFKNISCHDQRCQLVSSPDPPQACKAENQTCPYFYWYGDSSNTTGDFALETFTVNLTASSGKSEFRRVEDVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQSLYGHSFSYCLVDRNSNISSKLIFGEDKKLLRNPNLNFTSFVGGKENPVDTFYYVQIKSVIVGGEVLNIPKETWLASAGGGGGTIIDSGTTLTYFAEPAYEIIKEAFMKKIKGYLMIEDGHLPLKPCYNVSGFEAIELPNFGIMFADGAVWDFPAENYFIEIEPGSVVCLAILGTPHSALSIIGNYQQQNFHILYDLKNSRLGYAPVNCADSYALFFCFFPFRPSSQMVSFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASRPNLFM 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3471 767 Hamap 50S ribosomal protein L18Ae [rpl18a]. 595 658 IPR028877 -
Prci2g3471 767 Gene3D Acid Proteases 187 388 IPR021109 -
Prci2g3471 767 SUPERFAMILY Acid proteases 202 573 IPR021109 -
Prci2g3471 767 ProSiteProfiles Peptidase family A1 domain profile. 210 567 IPR033121 -
Prci2g3471 767 CDD pepsin_A_like_plant 209 571 IPR034161 -
Prci2g3471 767 Gene3D Acid Proteases 393 576 IPR021109 -
Prci2g3471 767 Pfam Xylanase inhibitor N-terminal 210 387 IPR032861 -
Prci2g3471 767 FunFam 60S ribosomal protein L18a 661 736 - -
Prci2g3471 767 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 225 236 IPR001969 GO:0004190|GO:0006508
Prci2g3471 767 SUPERFAMILY RplX-like 660 735 - -
Prci2g3471 767 PANTHER 60S RIBOSOMAL PROTEIN L18A 591 766 IPR028877 -
Prci2g3471 767 FunFam Eukaryotic aspartyl protease family protein 186 388 - -
Prci2g3471 767 Gene3D - 585 660 - -
Prci2g3471 767 FunFam Aspartyl protease family protein 389 574 - -
Prci2g3471 767 Pfam Xylanase inhibitor C-terminal 415 567 IPR032799 -
Prci2g3471 767 PRINTS Pepsin (A1) aspartic protease family signature 543 558 IPR001461 GO:0004190|GO:0006508
Prci2g3471 767 PRINTS Pepsin (A1) aspartic protease family signature 216 236 IPR001461 GO:0004190|GO:0006508
Prci2g3471 767 PRINTS Pepsin (A1) aspartic protease family signature 446 457 IPR001461 GO:0004190|GO:0006508
Prci2g3471 767 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 596 717 IPR023573 GO:0003735|GO:0005840|GO:0006412
Prci2g3471 767 Gene3D - 661 736 - -
Prci2g3471 767 FunFam 60S ribosomal protein L18a 590 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3471 Prci-Chr2 44396290 44404156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3471 589 767 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 92.179 6.49e-118 352