Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3467 ATGAAGGAGAGGCAACGTTGGACAGCTGAAGAGGATGCTTTATTGCGTGCTTACGTCAAAGAGTATGGCCCTAGGGAATGGAATCTTGTGTCCCAACGAATGAACAAACCCCTTAATAGGGATGCCAAATCCTGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAGGGGTCTCTTACCGAAGAAGAGAAATCTCTTGTCATCCACCTTCAACAGATTTATGGCAACAAATGGAAGAAAATTGCTGCAGAAGTCCCTGGTCGCACTGCCAAGAGGTTAGGTAAGTGGTGGGAAGTATTTAAAGAGAAGCAGCAGAGAGAGAAAAAAGACATCAACAAAACAGTTGATCCAATTGACGACACCAAATACGATCACATCCTTGAGACCTTTGCTGAGAAGCTTGTGAAAGAACGCCCTTCCCCATCCTACCTCATGGCTGCCTCCAATGGGGCATTTATTCTCACTGATGCACCAGCTCCTCCTTCAGCTATGCTTCCTTCATGGCTTTCTAACTCTAGCGGCAATTCAGCTATTAGGCCACCCTCCCCTTCTGTGACGCTAAGTCTCTCTCCCTCCACTGTTGCTGCTTCATCTCCATTTCAATGGTTACAACCCGAGAGAATGCCAGAGAATGCTCCTCCTGTTATTCGGAATGCAACACCTCATGGAACTATTTCAGGTTTTGGTGATAACATGCTTGTATCTGAGCTTGTTGAATACTGTAAAGAGCTGGAAGAAGGTCACCAGACATGGTCATCACATAGGAAGGAAGCAGTGTGGAGGTTAAGGCGGGTGGAGCTGCAGCTGGAGTCAGAGAAGGCATGTCGTATGCGAGAGAAGATGGAAGAGTTTGAAGTGAAGATTAAAGCTCTTTGGGAAGAACAGATGGCTGCTTTGGATAGAATGGAAGCCGAATACTGGGAGCAACTATCTGAACTGAGAAGAGATGCAGAAACCAAGGAGCAGAAATTGACTGGGCAATTAGCTGCTAAACACTCAAGGCTTAGTAAGCTTCTGGATCAGATAGGTTGCAGACCCAGGCTTGCTCAGCCTAATGTAAGATGA 1074 0.4637 MKERQRWTAEEDALLRAYVKEYGPREWNLVSQRMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEKSLVIHLQQIYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKDINKTVDPIDDTKYDHILETFAEKLVKERPSPSYLMAASNGAFILTDAPAPPSAMLPSWLSNSSGNSAIRPPSPSVTLSLSPSTVAASSPFQWLQPERMPENAPPVIRNATPHGTISGFGDNMLVSELVEYCKELEEGHQTWSSHRKEAVWRLRRVELQLESEKACRMREKMEEFEVKIKALWEEQMAALDRMEAEYWEQLSELRRDAETKEQKLTGQLAAKHSRLSKLLDQIGCRPRLAQPNVR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3467 357 Gene3D - 62 120 - -
Prci2g3467 357 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Prci2g3467 357 SMART sant 58 106 IPR001005 -
Prci2g3467 357 SMART sant 3 55 IPR001005 -
Prci2g3467 357 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Prci2g3467 357 Pfam Myb-like DNA-binding domain 7 69 - -
Prci2g3467 357 CDD SANT 6 53 IPR001005 -
Prci2g3467 357 Gene3D - 4 58 - -
Prci2g3467 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Prci2g3467 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Prci2g3467 357 CDD SANT 63 104 IPR001005 -
Prci2g3467 357 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 352 - -
Prci2g3467 357 FunFam MYB-related transcription factor 4 58 - -
Prci2g3467 357 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3467 Prci-Chr2 44315420 44318514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3467 1 348 MYB Transcription Factor Family AT2G37630 63.288 4.57e-151 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci2g3467 Myb_DNA-bind_6 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3467 K09422 - qsa:O6P43_016767 543.502