Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3459 ATGGAAGTGATCATGGCCAAGATTGAGGAAGAAGAAGAAGTGATGGCTCCTGGGTTTAGATTCCACCCTACAGATGAAGAGCTTGTAGGGTTTTATCTGCTGAGAAAAGTGCAGAAGAAGCCTCTCCGAATCGAACTCATCAAACAGATTGACATCTACAAATACCATCCTTGGGATCTTCCAAAGAGCAATGGGGTGGACGGAGAAAGAGAAGGATACTTCTTTTGCAGAAGAGGGAGAAAGTACAGAAACAGCAAGAGGCCCAACAGAGTGACAGTGAGTGGGTCTGGTTTCTGGAAAGCTACAGGCATTGATAAACCTATCTATGGAGATGGAGATGGAAACGGCGTCGTAATTGGCCTCAAGAAGTCATTAGTGTACTACCAAGGAACTGCTGGTAAAGCCTCCAGAAAAACTGAATGGATGATGCATGAGTTTCGTCTTCCTCCTCCTAACAATAACAACGCCAAAAATATTTCACAACCTGCTTCTGTTACTGCTGATGATCACCATCTTCATGATGCTGAAGTGTGGACACTATGCAAAATATTCAAACGAATCAAATCTCAGAAAAAGTACACACAAGCAGCCATCAAACCCAGCCTAGCTCATTCAAGTCCTGAATCAGGCAACTTAAGATATGACATCAATGGAAACTCATGCATCACTTTTGAAAACCCACAGATCATTCAGCAAAATGATGAAAGAAAACAGATTATGAGGAACGTTGAAGAGGTTGAACATGAAAGAAATCACTTATTTCTGAATGAGTTAGCTCAAGCTGCACCATCAGTAGTACTTACCCTAGCTTTTGGGACCCTGGTGTGA 828 0.4239 MEVIMAKIEEEEEVMAPGFRFHPTDEELVGFYLLRKVQKKPLRIELIKQIDIYKYHPWDLPKSNGVDGEREGYFFCRRGRKYRNSKRPNRVTVSGSGFWKATGIDKPIYGDGDGNGVVIGLKKSLVYYQGTAGKASRKTEWMMHEFRLPPPNNNNAKNISQPASVTADDHHLHDAEVWTLCKIFKRIKSQKKYTQAAIKPSLAHSSPESGNLRYDINGNSCITFENPQIIQQNDERKQIMRNVEEVEHERNHLFLNELAQAAPSVVLTLAFGTLV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3459 275 Gene3D NAC domain 24 191 IPR036093 GO:0003677|GO:0006355
Prci2g3459 275 ProSiteProfiles NAC domain profile. 15 186 IPR003441 GO:0003677|GO:0006355
Prci2g3459 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 231 - -
Prci2g3459 275 Pfam No apical meristem (NAM) protein 17 148 IPR003441 GO:0003677|GO:0006355
Prci2g3459 275 SUPERFAMILY NAC domain 12 185 IPR036093 GO:0003677|GO:0006355
Prci2g3459 275 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3459 Prci-Chr2 44166858 44170312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3459 8 211 NAC Transcription Factor Family AT5G39820 50.463 3.75e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci2g3459 NAM 5.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3459 - - qsa:O6P43_021055 291.197