Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3453 ATGGTGAATGAAGGGGGTCATCGGAGTCAGGAAGAGGGGCAGAAGAAGAAGACGGCGGTGGTTGAAGACAAGAAAGCCAGAATCGTGACGTTCTCAAAGCGTCGTTCTGCACTTTTCAAGAAAGCCAGCGAGCTTTCTGCGATGTGCGGTGCAGAGGTCGCCATCATCACCTTCTCGCCGTCCGGCAAACCCTACGCCTTCGGAAGCCCAAGCGTAGAGAAAATCATCAACAAGTACACTGCCGACAATAACATCACTGTTCCTCCACCTACTCTTACTGTTTCTGCTCAGTCTAGCAGATTGGCTCAGCTTTACAAGGAATATGCTGAGTTGCAGGCTGAGCTTGAAGCTGAGGAAAGGAGAGGAGAAGAACTGAGACGAAGGAGGCCTCGTGATTACCCAGACATTAGCAAGATGAACTGCGAGGAACTGGCAGAGTACAAGGCGAAGCTGGAGGATTTCAAGCGCCGTATGGAGGAGCACTTTGAGAATCTGAACAAAAATAACGCAGTTTGA 516 0.5019 MVNEGGHRSQEEGQKKKTAVVEDKKARIVTFSKRRSALFKKASELSAMCGAEVAIITFSPSGKPYAFGSPSVEKIINKYTADNNITVPPPTLTVSAQSSRLAQLYKEYAELQAELEAEERRGEELRRRRPRDYPDISKMNCEELAEYKAKLEDFKRRMEEHFENLNKNNAV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3453 171 SMART madsneu2 13 70 IPR002100 GO:0003677|GO:0046983
Prci2g3453 171 SUPERFAMILY SRF-like 15 85 IPR036879 GO:0003677|GO:0046983
Prci2g3453 171 PANTHER MADS BOX PROTEIN 17 160 - -
Prci2g3453 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Prci2g3453 171 Coils Coil 94 128 - -
Prci2g3453 171 ProSiteProfiles MADS-box domain profile. 21 71 IPR002100 GO:0003677|GO:0046983
Prci2g3453 171 Gene3D - 23 88 IPR036879 GO:0003677|GO:0046983
Prci2g3453 171 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Prci2g3453 171 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Prci2g3453 171 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Prci2g3453 171 FunFam Agamous-like MADS-box protein AGL62 23 87 - -
Prci2g3453 171 Coils Coil 144 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3453 Prci-Chr2 43999453 44000138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3453 15 166 Type I MADS-box Gene Family AT2G24840 36.471 2.01e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci2g3453 SRF-TF 5.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3453 - - pcin:129302011 294.664