Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3450 ATGGCGAGAAGACCAAGCAAGAAGAACAAGACACTGATCCAAGACGCAAGAATCAAGCACGTCACCTTCTCCAAGCGTCGATTCGGAATCTTCAAGAAAGCCAGCGAGCTCTGTACCTTGTGCGCCGTGGAGATGGTTCTCATCATCTTCTCGCCAGGCGGTAAACCCTACTCCTTCAGCCATCCTTCGTCGGAAGCAGTAATCAACAGACTCGTCACCGGTTCTGCAGATCCAAAGATCGATCATGAAGAAAGGGCCGAACGAGAAGCTAGGTTGGCTGAACTGAACAAGCACTGCTGCGATCTGAATGCACAGTTGAAGGAAGAGAAGAAACGAGGGAAGGAGCTGAAGAAGAGAATGATGAATCTTCCAGATATCGAAAAGATGAACAGAGAGGAGCTGATGAAAATGAAGACGTCGCTGGAAGATCTGAGAGTCAGAGTACGCAATCGTAAAGAGGAGCTTTTAGCAGGGAAGGCTATGGAGGATGATGATGATCTGAGTTTAACGTTGGGTGGCGTATTTTCTGCAGGAGAAGCTTCTTCAAGCTCAGCGAACAAGGGTGGCGGTGATATTAATCTGAGTCTATCAGCTTTTGTTCCCAGGTGA 609 0.4811 MARRPSKKNKTLIQDARIKHVTFSKRRFGIFKKASELCTLCAVEMVLIIFSPGGKPYSFSHPSSEAVINRLVTGSADPKIDHEERAEREARLAELNKHCCDLNAQLKEEKKRGKELKKRMMNLPDIEKMNREELMKMKTSLEDLRVRVRNRKEELLAGKAMEDDDDLSLTLGGVFSAGEASSSSANKGGGDINLSLSAFVPR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3450 202 Coils Coil 103 123 - -
Prci2g3450 202 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Prci2g3450 202 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Prci2g3450 202 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Prci2g3450 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 59 IPR002100 GO:0003677|GO:0046983
Prci2g3450 202 Gene3D - 16 82 IPR036879 GO:0003677|GO:0046983
Prci2g3450 202 FunFam Agamous-like MADS-box protein AGL62 15 80 - -
Prci2g3450 202 PANTHER MADS BOX PROTEIN 9 149 - -
Prci2g3450 202 ProSiteProfiles MADS-box domain profile. 13 63 IPR002100 GO:0003677|GO:0046983
Prci2g3450 202 SUPERFAMILY SRF-like 9 74 IPR036879 GO:0003677|GO:0046983
Prci2g3450 202 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3450 Prci-Chr2 43980428 43986725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3450 19 148 Type I MADS-box Gene Family AT2G24840 40.714 2.43e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci2g3450 SRF-TF 6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3450 - - pcin:129297271 380.563