Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3436 ATGAACTCTCATCACCAGGAGGCCCAAAATCATCACCATCACCATGAGCCATTGATAAGGGTGGACGAAGACGACGAAGACGATGCTTCTAATTGGATTCCACATTATTCATCTGCACAAGTTGAGGAGTTTCTGGGAAATAGGACTATGAGAGAGAAGAAGAAGAAGACACTGAAATGGTGGATTAGGGTTATTGCATGGGAGACGAAGCTGGTTTGGCTCTTATCATGGGCTGCTATAACGTCTGGTGTGTTCAACTACATGTTGATATTTGTTACTCTCATTTTTGTTGGCCATTTGGGTGACTCCCAACTTGCCGGTGCTTCTCTTGCTTGTCTTGGTCTTCAAGGTCTTGCTTATGCTGTCATGGTAGGAATGGCTAGTCCAGTTCAAACAGTGTGCGGTCAAGCATACGGGGCCAAGAAATATGCAGTGATGGGCATCATCTGTCAAAGAACGATGATGTTGCAGTTATTAGCAGCCATTGTTCTGAGCTTCTTCTTCTGGTACTCTGGTCCGGTCCTCAAGTTCTTCGGCAAAAACGACACCGTCGAGATCGCAGAAATAGGCCAAGTCTTTGGACGTGGACTCATCCCTATGCTTTACGCCTATGCGCTTGTGTATCCCATGCAGAGATTTCTGATTTCTCAGAACATTGTCAACTTTCTGGCTTATGTTGCTGTTGGGGTTTTCTGTTTTCATCTTCTTCTCACGTGGCTCGTCGTCTCTGTTCTAGGGTTTGGTCTTCTTGGTGCTGCTCTTACTCTGTGTTTCTCTTGGTGGTTGCTTGTGTTCGTCACTGGCCTTTACATTGTTTTAAGCCCTTCTTGCTCCAGAACATGGACTGGCTTTTCTCGTAAAGCTTTCAAGTTGAAAGGATTGTGGACTTATCTCAAGCTTCTTGTTTCTTCTACCGCCATGATGTGTTTGGATGTAGGGTTTGCTCTCGCTGTGTATGTTCTATCAGAGATGCTTCCCAACTCTACCATTGCAGTCGACTCTCTTTCCATTTGTCTCAACTATGTCAACTGGCACTCTAGCTTTGTCACTGGCTTGTTACTTGCCTCCAGTGTTAGAGTAAGCAATGAACTTGGGGCTGGAAATGCGAGGTTGGCAAAATTCTCAGTGGCTGTAAGTAATGGAATCGGCATCATCATCTGCTTGCTCTGTGCTGTGATTGTTTTGGTGTTTCGTGTGCAACTCATTAAGCTCTATGCCTCTGATTCTCAAGTTATTCGTCTCACTTCCTCTTTGTTCCCTCTTATTGCCCTCTACTTTCTCATCAATGGCAATCACTTTATCCTCTTTGGGCAAGCAATAGGAAGTGGACGACAAGCCATGGTGGGTTGGATAAACTTGGTTGTTTATGCTATTGGCTTCGCTCTTGCCTACCTTCTTGGCTTCAAAACATCACTAGGCCTTGCTGGTCTTTGTTGGGCTTGGGTTATTGGAATTGCCCTAGAGACAATTATTGTTGGTGGGATCATAATTCTCACCGATTGGGAAGTTCAGGTTGCTGCCTCAACAAATAAGGAAGTAGATGGACATATTCCCAATTACCCTAACTTGCCACCGCAGCTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATTTAGAAACAGATGAAGTATATGCTCAAATGACTTTGCAACCTTTAAGTCCGCAAGAGCAAAAGGATATATATCTACTGCCTGCAGAATTGGGTACTGCCAACAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACCAGCACTCATGGAGGATTCTCTGTTCCTCGAAGAGCTGCTGAAAAAGTCTTCCCTCCGCTTGATTACTCGCAGCAGCCTCCTGCACAGGAACTAATTGCAAGGGATCTCCATGATAATGAATGGAAATTCAGGCACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTAACTACAGGGTGGAGTGTTTTTGTTAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGACAAAAATCAATTACTCTTGGGAATTCGGCGAGCAAATCGTCCACAGACTGTCATGCCATCTTCAGTTCTGTCAAGTGACAGCATGCATATTGGTCTTCTTGCTGCTGCAGCTCATGCGGCTGCCACAAATAGCCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTGATTCCCTTGGCTAAGTATGTCAAAGCTGTGTATCATACCCGAGTTTCTGTTGGTATGCGATTTAGGATGCTATTTGAGACAGAAGAATCAAGCGTCCGTAGATACATGGGTACTATAACAGGCATTAGTGATTTGGATCCTGTTCGCTGGCCAAATTCACACTGGCGTTCCGTAAAGGTTGGCTGGGATGAGTCCTCTGCAGGGGACAGGCAGCCTAGAGTTTCGTTGTGGGAGATTGAACCGTTGACAACATTCCCTATGTATCCATCCCCATTCCCTTTAAGGCTGAAACGCCCTTGGTCATCAGGACTACCTTCTTTTGGTATAAAGGATGGTGACGTGAGCATTAGTTCTCCATTCACGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTCTGAACTTCCAGGGACTGGGGGTTGCACCATGGATGCAGCCAAGACTTGATGCTTCTATGTCAGGACTTCAGCCAGAAATATACCAAGCTATGGCTGCTGCTGCACTTCAGGAAATGAGGGCAATGGGTCCATCTAAACCTTCTTCTGAATCTCTTCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTTCTGGTATCCAGGGGCAAGTTTTACAGCAGTCTCAGTCGCAACATGTTCTACGCAACTTTCAAGAAAACCAGATTCCTGCTCAGTCTTCACATCTGCAACGACAGTTGCAGCGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAGCAGCAACCTAACAGTTTACCTGTTCAGCAGCAGATCTCAAATGTTGTCTCTCCTTTGTCTAATTTTGCATCACCTACCCAGTTTCTCTCTCCATCCGTGCCAACCATTGCTTCAAATTGCCAGCAGCAGAGTTTTCCTGAACCTGCCAGGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCATAGTCTACTAGGATCGTTTCCCCAGGATGGAGTATCCCAGTTACTTAACATGCATGGGTCCAACTCTCTGGTTCCTCCTGCTTCCTTACTACCTAAGCAAATAGCTGTTGAACCTCAGCTTCAAACTGCTGCTGCTCACTGTGTATTACCCCAGATGGAAAACTTGGGAACATCACAGTCAAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCAAGGTGCTGGTGATCCTCAGACCAATCTTTTGTTTGGGGTTAATATTGATCCTGTTCTTATGTTACAAAATAGCATGTCCAACATGAGAAATGTTGGCAATGAGAATGATACATTATTGATGTCCTTTTCAGCTTCAAACTTCCCTGGTGCTACAGGGACTGATTATCCTCCAAGTTCAGACATGACAACATCAAGTTGTGTAGAGGAATCTGGTTTTTTGCAGTCTTCTGAAAATGTGGAGCAACCAAACACATCAACCGGAACCTTTGTCAAGGTTCACAAGTTAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTTAGCAGCTATGATGAACTACGTAGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATATTCTTCTCCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTCTCTCCACTTGAAGTTCAACAAATGGGCAGAGAAAGTCTGGGTCCCACAGCTTCTGCATTGGGTCATAAGCTTTCTACCACTGGCAATACTTGCGACAACTATGCAAGTCGGCAAGAGCTGAGAAATCCGAGCAATGGCATTGCGTCGATGGGGTCTCTGGACTACTAG 4032 0.4531 MNSHHQEAQNHHHHHEPLIRVDEDDEDDASNWIPHYSSAQVEEFLGNRTMREKKKKTLKWWIRVIAWETKLVWLLSWAAITSGVFNYMLIFVTLIFVGHLGDSQLAGASLACLGLQGLAYAVMVGMASPVQTVCGQAYGAKKYAVMGIICQRTMMLQLLAAIVLSFFFWYSGPVLKFFGKNDTVEIAEIGQVFGRGLIPMLYAYALVYPMQRFLISQNIVNFLAYVAVGVFCFHLLLTWLVVSVLGFGLLGAALTLCFSWWLLVFVTGLYIVLSPSCSRTWTGFSRKAFKLKGLWTYLKLLVSSTAMMCLDVGFALAVYVLSEMLPNSTIAVDSLSICLNYVNWHSSFVTGLLLASSVRVSNELGAGNARLAKFSVAVSNGIGIIICLLCAVIVLVFRVQLIKLYASDSQVIRLTSSLFPLIALYFLINGNHFILFGQAIGSGRQAMVGWINLVVYAIGFALAYLLGFKTSLGLAGLCWAWVIGIALETIIVGGIIILTDWEVQVAASTNKEVDGHIPNYPNLPPQLICQLHNVTMHADLETDEVYAQMTLQPLSPQEQKDIYLLPAELGTANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESSAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWSSGLPSFGIKDGDVSISSPFTWLQGGLGDQGMQSLNFQGLGVAPWMQPRLDASMSGLQPEIYQAMAAAALQEMRAMGPSKPSSESLLQFQQSSNVPGAPSGIQGQVLQQSQSQHVLRNFQENQIPAQSSHLQRQLQRYHPYNDQRQQQQQQPNSLPVQQQISNVVSPLSNFASPTQFLSPSVPTIASNCQQQSFPEPARNQIPSSDVSAIHSLLGSFPQDGVSQLLNMHGSNSLVPPASLLPKQIAVEPQLQTAAAHCVLPQMENLGTSQSNVSELPILPPFPGREYSAYQGAGDPQTNLLFGVNIDPVLMLQNSMSNMRNVGNENDTLLMSFSASNFPGATGTDYPPSSDMTTSSCVEESGFLQSSENVEQPNTSTGTFVKVHKLGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLEVQQMGRESLGPTASALGHKLSTTGNTCDNYASRQELRNPSNGIASMGSLDY 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3436 1343 Gene3D - 1204 1297 - -
Prci2g3436 1343 MobiDBLite consensus disorder prediction 904 939 - -
Prci2g3436 1343 MobiDBLite consensus disorder prediction 1 20 - -
Prci2g3436 1343 FunFam Auxin response factor 578 682 - -
Prci2g3436 1343 ProSiteProfiles PB1 domain profile. 1208 1292 IPR000270 GO:0005515
Prci2g3436 1343 CDD B3_DNA 579 680 IPR003340 GO:0003677
Prci2g3436 1343 FunFam Auxin response factor 1203 1297 - -
Prci2g3436 1343 Pfam Auxin response factor 706 789 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci2g3436 1343 Pfam B3 DNA binding domain 580 681 IPR003340 GO:0003677
Prci2g3436 1343 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 504 1297 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci2g3436 1343 CDD MATE_eukaryotic 68 506 IPR045069 GO:0042910|GO:1990961
Prci2g3436 1343 SUPERFAMILY CAD & PB1 domains 1200 1282 - -
Prci2g3436 1343 ProSiteProfiles B3 DNA-binding domain profile. 580 682 IPR003340 GO:0003677
Prci2g3436 1343 MobiDBLite consensus disorder prediction 911 939 - -
Prci2g3436 1343 FunFam Auxin response factor 744 816 - -
Prci2g3436 1343 NCBIfam MATE family efflux transporter 80 477 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Prci2g3436 1343 Gene3D - 744 816 - -
Prci2g3436 1343 Gene3D - 578 681 IPR015300 -
Prci2g3436 1343 SMART B3_2 580 682 IPR003340 GO:0003677
Prci2g3436 1343 Pfam MatE 307 465 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Prci2g3436 1343 Pfam MatE 82 240 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Prci2g3436 1343 Pfam AUX/IAA family 1199 1290 IPR033389 -
Prci2g3436 1343 SUPERFAMILY DNA-binding pseudobarrel domain 565 709 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3436 Prci-Chr2 43816174 43836893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3436 549 1302 B3 DNA Binding Superfamily AT5G37020 54.915 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci2g3436 MatE 1.5e-16 CL0222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3436 - - pcin:129302482 2626.28