Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3428 ATGCATGCAGATTTAGAAACAGATGAAGTATATGCTCAAATGACTTTGCAACCTTTAAGTCCGCAAGAGCAAAAGGATATATATCTACTGCCTGCAGAATTGGGTACTGCCAACAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACCAGCACTCATGGAGGATTCTCTGTTCCTCGAAGAGCTGCTGAAAAAGTCTTCCCTCCGCTTGATTACTCGCAGCAGCCTCCTGCACAGGAACTAATTGCAAGGGATCTCCATGATAATGAATGGAAATTCAGGCACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTAACTACAGGGTGGAGTGTTTTTGTTAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGACAAAAATCAATTACTCTTGGGAATTCGGCGAGCAAATCGTCCACAGACTGTCATGCCATCTTCAGTTCTGTCAAGTGACAGCATGCATATTGGTCTTCTTGCTGCTGCAGCTCATGCGGCTGCCACAAATAGCCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTGATTCCCTTGGCTAAGTATGTCAAAGCTGTGTATCATACCCGAGTTTCTGTTGGTATGCGATTTAGGATGCTATTTGAGACAGAAGAATCAAGCGTCCGTAGATACATGGGTACTATAACAGGCATTAGTGATTTGGATCCTGTTCGCTGGCCAAATTCACACTGGCGTTCCGTAAAGGTTGGCTGGGATGAGTCCTCTGCAGGGGACAGGCAGCCTAGAGTTTCGTTGTGGGAGATTGAACCGTTGACAACATTCCCTATGTATCCATCCCCATTCCCTTTAAGGCTGAAACGCCCTTGGTCATCAGGACTACCTTCTTTTGGTATAAAGGATGGTGACGTGAGCATTAGTTCTCCATTCACGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTCTGAACTTCCAGGGACTGGGGGTTGCACCATGGATGCAGCCAAGACTTGATGCTTCTATGTCAGGACTTCAGCCAGAAATATACCAAGCTATGGCTGCTGCTGCACTTCAGGAAATGAGGGCAATGGGTCCATCTAAACCTTCTTCTGAATCTCTTCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTTCTGGTATCCAGGGGCAAGTTTTACAGCAGTCTCAGTCGCAACATGTTCTACGCAACTTTCAAGAAAACCAGATTCCTGCTCAGTCTTCACATCTGCAACGACAGTTGCAGCGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAGCAGCAACCTAACAGTTTACCTGTTCAGCAGCAGATCTCAAATGTTGTCTCTCCTTTGTCTAATTTTGCATCACCTACCCAGTTTCTCTCTCCATCCGTGCCAACCATTGCTTCAAATTGCCAGCAGCAGAGTTTTCCTGAACCTGCCAGGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCATAGTCTACTAGGATCGTTTCCCCAGGATGGAGTATCCCAGTTACTTAACATGCATGGGTCCAACTCTCTGGTTCCTCCTGCTTCCTTACTACCTAAGCAAATAGCTGTTGAACCTCAGCTTCAAACTGCTGCTGCTCACTGTGTATTACCCCAGATGGAAAACTTGGGAACATCACAGTCAAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCAAGCTTCAAACTTCCCTGGTGCTACAGGGACTGATTATCCTCCAAGTTCAGACATGACAACATCAAGTTGTGTAGAGGAATCTGGTTTTTTGCAGTCTTCTGAAAATGTGGAGCAACCAAACACATCAACCGGAACCTTTGTCAAGGTTCACAAGTTAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTTAGCAGCTATGATGAACTACGTAGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATATTCTTCTCCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTCTCTCCACTTGAAGTTCAACAAATGGGCAGAGAAAGTCTGGGTCCCACAGCTTCTGCATTGGGTCATAAGCTTTCTACCACTGGCAATACTTGCGACAACTATGCAAGTCGGCAAGAGCTGAGAAATCCGAGCAATGGCATTGCGTCGATGGGGTCTCTGGACTACTAG 2298 0.4604 MHADLETDEVYAQMTLQPLSPQEQKDIYLLPAELGTANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESSAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWSSGLPSFGIKDGDVSISSPFTWLQGGLGDQGMQSLNFQGLGVAPWMQPRLDASMSGLQPEIYQAMAAAALQEMRAMGPSKPSSESLLQFQQSSNVPGAPSGIQGQVLQQSQSQHVLRNFQENQIPAQSSHLQRQLQRYHPYNDQRQQQQQQPNSLPVQQQISNVVSPLSNFASPTQFLSPSVPTIASNCQQQSFPEPARNQIPSSDVSAIHSLLGSFPQDGVSQLLNMHGSNSLVPPASLLPKQIAVEPQLQTAAAHCVLPQMENLGTSQSNVSELPILPPFPGREYSAYQASNFPGATGTDYPPSSDMTTSSCVEESGFLQSSENVEQPNTSTGTFVKVHKLGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLEVQQMGRESLGPTASALGHKLSTTGNTCDNYASRQELRNPSNGIASMGSLDY 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3428 765 ProSiteProfiles B3 DNA-binding domain profile. 45 147 IPR003340 GO:0003677
Prci2g3428 765 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 719 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci2g3428 765 MobiDBLite consensus disorder prediction 369 404 - -
Prci2g3428 765 FunFam Auxin response factor 209 281 - -
Prci2g3428 765 ProSiteProfiles PB1 domain profile. 630 714 IPR000270 GO:0005515
Prci2g3428 765 FunFam Auxin response factor 625 719 - -
Prci2g3428 765 CDD B3_DNA 44 145 IPR003340 GO:0003677
Prci2g3428 765 Gene3D - 43 146 IPR015300 -
Prci2g3428 765 Gene3D - 209 281 - -
Prci2g3428 765 Pfam Auxin response factor 171 254 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci2g3428 765 MobiDBLite consensus disorder prediction 376 404 - -
Prci2g3428 765 Pfam B3 DNA binding domain 45 146 IPR003340 GO:0003677
Prci2g3428 765 Gene3D - 626 719 - -
Prci2g3428 765 Pfam AUX/IAA family 621 712 IPR033389 -
Prci2g3428 765 FunFam Auxin response factor 43 147 - -
Prci2g3428 765 SUPERFAMILY DNA-binding pseudobarrel domain 30 174 IPR015300 -
Prci2g3428 765 SUPERFAMILY CAD & PB1 domains 622 704 - -
Prci2g3428 765 SMART B3_2 45 147 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3428 Prci-Chr2 43657473 43667749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3428 14 724 B3 DNA Binding Superfamily AT5G37020 54.966 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci2g3428 AUX_IAA 2.5e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3428 - - pcin:129302482 1480.31