Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3426 ATGAATCTTTCTTCTTCAGGACTTGTTCAACCGGCTCAAGAAGGGGAGAAAAAATGTTTGAATTCTGAACTATGGCATGCATGTGCTGGTCCTCTTGTGTCCCTGCCACCTGTTGGAAGTCGTGTGGTATACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCCTCAACAAATAAGGAAGTAGATGGACATATTCCCAATTACCCTAACTTGCCACCGCAGCTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATTTAGAAACAGATGAAGTATATGCTCAAATGACTTTGCAACCTTTAAGTCCGCAAGAGCAAAAGGATATATATCTACTGCCTGCAGAATTGGGTACTGCCAACAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACCAGCACTCATGGAGGATTCTCTGTTCCTCGAAGAGCTGCTGAAAAAGTCTTCCCTCCGCTTGATTACTCGCAGCAGCCTCCTGCACAGGAACTAATTGCAAGGGATCTCCATGATAATGAATGGAAATTCAGGCACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTAACTACAGGGTGGAGTGTTTTTGTTAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGACAAAAATCAATTACTCTTGGGAATTCGGCGAGCAAATCGTCCACAGACTGTCATGCCATCTTCAGTTCTGTCAAGTGACAGCATGCATATTGGTCTTCTTGCTGCTGCAGCTCATGCGGCTGCCACAAATAGCCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTGATTCCCTTGGCTAAGTATGTCAAAGCTGTGTATCATACCCGAGTTTCTGTTGGTATGCGATTTAGGATGCTATTTGAGACAGAAGAATCAAGCGTCCGTAGATACATGGGTACTATAACAGGCATTAGTGATTTGGATCCTGTTCGCTGGCCAAATTCACACTGGCGTTCCGTAAAGGTTGGCTGGGATGAGTCCTCTGCAGGGGACAGGCAGCCTAGAGTTTCGTTGTGGGAGATTGAACCGTTGACAACATTCCCTATGTATCCATCCCCATTCCCTTTAAGGCTGAAACGCCCTTGGTCATCAGGACTACCTTCTTTTGGTATAAAGGATGGTGACGTGAGCATTAGTTCTCCATTCACGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTCTGAACTTCCAGGGACTGGGGGTTGCACCATGGATGCAGCCAAGACTTGATGCTTCTATGTCAGGACTTCAGCCAGAAATATACCAAGCTATGGCTGCTGCTGCACTTCAGGAAATGAGGGCAATGGGTCCATCTAAACCTTCTTCTGAATCTCTTCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTTCTGGTATCCAGGGGCAAGTTTTACAGCAGTCTCAGTCGCAACATGTTCTACGCAACTTTCAAGAAAACCAGATTCCTGCTCAGTCTTCACATCTGCAACGACAGTTGCAGCGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAGCAGCAACCTAACAGTTTACCTGTTCAGCAGCAGATCTCAAATGTTGTCTCTCCTTTGTCTAATTTTGCATCACCTACCCAGTTTCTCTCTCCATCCGTGCCAACCATTGCTTCAAATTGCCAGCAGCAGAGTTTTCCTGAACCTGCCAGGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCATAGTCTACTAGGATCGTTTCCCCAGGATGGAGTATCCCAGTTACTTAACATGCATGGGTCCAACTCTCTGGTTCCTCCTGCTTCCTTACTACCTAAGCAAATAGCTGTTGAACCTCAGCTTCAAACTGCTGCTGCTCACTGTGTATTACCCCAGATGGAAAACTTGGGAACATCACAGTCAAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCAAGGTGCTGGTGATCCTCAGACCAATCTTTTGTTTGGGGTTAATATTGATCCTGTTCTTATGTTACAAAATAGCATGTCCAACATGAGAAATGTTGGCAATGAGAATGATACATTATTGATGTCCTTTTCAGCTTCAAACTTCCCTGGTGCTACAGGGACTGATTATCCTCCAAGTTCAGACATGACAACATCAAGTTGTGTAGAGGAATCTGGTTTTTTGCAGTCTTCTGAAAATGTGGAGCAACCAAACACATCAACCGGAACCTTTGTCAAGGTTCACAAGTTAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTTAGCAGCTATGATGAACTACGTAGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATATTCTTCTCCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTCTCTCCACTTGAAGTTCAACAAATGGGCAGAGAAAGTCTGGGTCCCACAGCTTCTGCATTGGGTCATAAGCTTTCTACCACTGGCAATACTTGCGACAACTATGCAAGTCGGCAAGAGCTGAGAAATCCGAGCAATGGCATTGCGTCGATGGGGTCTCTGGACTACTAG 2676 0.4555 MNLSSSGLVQPAQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDGHIPNYPNLPPQLICQLHNVTMHADLETDEVYAQMTLQPLSPQEQKDIYLLPAELGTANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESSAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWSSGLPSFGIKDGDVSISSPFTWLQGGLGDQGMQSLNFQGLGVAPWMQPRLDASMSGLQPEIYQAMAAAALQEMRAMGPSKPSSESLLQFQQSSNVPGAPSGIQGQVLQQSQSQHVLRNFQENQIPAQSSHLQRQLQRYHPYNDQRQQQQQQPNSLPVQQQISNVVSPLSNFASPTQFLSPSVPTIASNCQQQSFPEPARNQIPSSDVSAIHSLLGSFPQDGVSQLLNMHGSNSLVPPASLLPKQIAVEPQLQTAAAHCVLPQMENLGTSQSNVSELPILPPFPGREYSAYQGAGDPQTNLLFGVNIDPVLMLQNSMSNMRNVGNENDTLLMSFSASNFPGATGTDYPPSSDMTTSSCVEESGFLQSSENVEQPNTSTGTFVKVHKLGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLEVQQMGRESLGPTASALGHKLSTTGNTCDNYASRQELRNPSNGIASMGSLDY 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3426 891 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Prci2g3426 891 FunFam Auxin response factor 126 230 - -
Prci2g3426 891 SMART B3_2 128 230 IPR003340 GO:0003677
Prci2g3426 891 FunFam Auxin response factor 292 364 - -
Prci2g3426 891 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci2g3426 891 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Prci2g3426 891 MobiDBLite consensus disorder prediction 459 487 - -
Prci2g3426 891 Gene3D - 292 364 - -
Prci2g3426 891 Gene3D - 752 845 - -
Prci2g3426 891 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Prci2g3426 891 ProSiteProfiles PB1 domain profile. 756 840 IPR000270 GO:0005515
Prci2g3426 891 CDD B3_DNA 127 228 IPR003340 GO:0003677
Prci2g3426 891 Gene3D - 126 229 IPR015300 -
Prci2g3426 891 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 845 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci2g3426 891 SUPERFAMILY CAD & PB1 domains 748 830 - -
Prci2g3426 891 MobiDBLite consensus disorder prediction 452 487 - -
Prci2g3426 891 FunFam Auxin response factor 751 845 - -
Prci2g3426 891 Pfam AUX/IAA family 747 838 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3426 Prci-Chr2 43656934 43667749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3426 97 850 B3 DNA Binding Superfamily AT5G37020 54.414 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci2g3426 AUX_IAA 3.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3426 - - pcin:129302482 1653.26