Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3425 ATGAATCTTTCTTCTTCAGGACTTGTTCAACCGGCTCAAGAAGCTTGTGATTATGCAGGGGAGAAAAAATGTTTGAATTCTGAACTATGGCATGCATGTGCTGGTCCTCTTGTGTCCCTGCCACCTGTTGGAAGTCGTGTGGTATACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCCTCAACAAATAAGGAAGTAGATGGACATATTCCCAATTACCCTAACTTGCCACCGCAGCTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATTTAGAAACAGATGAAGTATATGCTCAAATGACTTTGCAACCTTTAAGTCCGCAAGAGCAAAAGGATATATATCTACTGCCTGCAGAATTGGGTACTGCCAACAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACCAGCACTCATGGAGGATTCTCTGTTCCTCGAAGAGCTGCTGAAAAAGTCTTCCCTCCGCTTGATTACTCGCAGCAGCCTCCTGCACAGGAACTAATTGCAAGGGATCTCCATGATAATGAATGGAAATTCAGGCACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTAACTACAGGGTGGAGTGTTTTTGTTAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGACAAAAATCAATTACTCTTGGGAATTCGGCGAGCAAATCGTCCACAGACTGTCATGCCATCTTCAGTTCTGTCAAGTGACAGCATGCATATTGGTCTTCTTGCTGCTGCAGCTCATGCGGCTGCCACAAATAGCCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTGATTCCCTTGGCTAAGTATGTCAAAGCTGTGTATCATACCCGAGTTTCTGTTGGTATGCGATTTAGGATGCTATTTGAGACAGAAGAATCAAGCGTCCGTAGATACATGGGTACTATAACAGGCATTAGTGATTTGGATCCTGTTCGCTGGCCAAATTCACACTGGCGTTCCGTAAAGGTTGGCTGGGATGAGTCCTCTGCAGGGGACAGGCAGCCTAGAGTTTCGTTGTGGGAGATTGAACCGTTGACAACATTCCCTATGTATCCATCCCCATTCCCTTTAAGGCTGAAACGCCCTTGGTCATCAGGACTACCTTCTTTTGGTATAAAGGATGGTGACGTGAGCATTAGTTCTCCATTCACGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTCTGAACTTCCAGGGACTGGGGGTTGCACCATGGATGCAGCCAAGACTTGATGCTTCTATGTCAGGACTTCAGCCAGAAATATACCAAGCTATGGCTGCTGCTGCACTTCAGGAAATGAGGGCAATGGGTCCATCTAAACCTTCTTCTGAATCTCTTCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTTCTGGTATCCAGGGGCAAGTTTTACAGCAGTCTCAGTCGCAACATGTTCTACGCAACTTTCAAGAAAACCAGATTCCTGCTCAGTCTTCACATCTGCAACGACAGTTGCAGCGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAGCAGCAACCTAACAGTTTACCTGTTCAGCAGCAGATCTCAAATGTTGTCTCTCCTTTGTCTAATTTTGCATCACCTACCCAGTTTCTCTCTCCATCCGTGCCAACCATTGCTTCAAATTGCCAGCAGCAGAGTTTTCCTGAACCTGCCAGGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCATAGTCTACTAGGATCGTTTCCCCAGGATGGAGTATCCCAGTTACTTAACATGCATGGGTCCAACTCTCTGGTTCCTCCTGCTTCCTTACTACCTAAGCAAATAGCTGTTGAACCTCAGCTTCAAACTGCTGCTGCTCACTGTGTATTACCCCAGATGGAAAACTTGGGAACATCACAGTCAAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCAAGGTGCTGGTGATCCTCAGACCAATCTTTTGTTTGGGGTTAATATTGATCCTGTTCTTATGTTACAAAATAGCATGTCCAACATGAGAAATGTTGGCAATGAGAATGATACATTATTGATGTCCTTTTCAGCTTCAAACTTCCCTGGTGCTACAGGGACTGATTATCCTCCAAGTTCAGACATGACAACATCAAGTTGTGTAGAGGAATCTGGTTTTTTGCAGTCTTCTGAAAATGTGGAGCAACCAAACACATCAACCGGAACCTTTGTCAAGGTTCACAAGTTAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTTAGCAGCTATGATGAACTACGTAGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATATTCTTCTCCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTCTCTCCACTTGAAGTTCAACAAATGGGCAGAGAAAGTCTGGGTCCCACAGCTTCTGCATTGGGTCATAAGCTTTCTACCACTGGCAATACTTGCGACAACTATGCAAGTCGGCAAGAGCTGAGAAATCCGAGCAATGGCATTGCGTCGATGGGGTCTCTGGACTACTAG 2691 0.4552 MNLSSSGLVQPAQEACDYAGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDGHIPNYPNLPPQLICQLHNVTMHADLETDEVYAQMTLQPLSPQEQKDIYLLPAELGTANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESSAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWSSGLPSFGIKDGDVSISSPFTWLQGGLGDQGMQSLNFQGLGVAPWMQPRLDASMSGLQPEIYQAMAAAALQEMRAMGPSKPSSESLLQFQQSSNVPGAPSGIQGQVLQQSQSQHVLRNFQENQIPAQSSHLQRQLQRYHPYNDQRQQQQQQPNSLPVQQQISNVVSPLSNFASPTQFLSPSVPTIASNCQQQSFPEPARNQIPSSDVSAIHSLLGSFPQDGVSQLLNMHGSNSLVPPASLLPKQIAVEPQLQTAAAHCVLPQMENLGTSQSNVSELPILPPFPGREYSAYQGAGDPQTNLLFGVNIDPVLMLQNSMSNMRNVGNENDTLLMSFSASNFPGATGTDYPPSSDMTTSSCVEESGFLQSSENVEQPNTSTGTFVKVHKLGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLEVQQMGRESLGPTASALGHKLSTTGNTCDNYASRQELRNPSNGIASMGSLDY 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3425 896 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Prci2g3425 896 SUPERFAMILY CAD & PB1 domains 753 835 - -
Prci2g3425 896 SUPERFAMILY DNA-binding pseudobarrel domain 118 262 IPR015300 -
Prci2g3425 896 MobiDBLite consensus disorder prediction 457 492 - -
Prci2g3425 896 Pfam AUX/IAA family 752 843 IPR033389 -
Prci2g3425 896 Gene3D - 297 369 - -
Prci2g3425 896 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Prci2g3425 896 FunFam Auxin response factor 297 369 - -
Prci2g3425 896 FunFam Auxin response factor 756 850 - -
Prci2g3425 896 Gene3D - 757 850 - -
Prci2g3425 896 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 850 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci2g3425 896 Gene3D - 131 234 IPR015300 -
Prci2g3425 896 Pfam Auxin response factor 259 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci2g3425 896 CDD B3_DNA 132 233 IPR003340 GO:0003677
Prci2g3425 896 FunFam Auxin response factor 131 235 - -
Prci2g3425 896 MobiDBLite consensus disorder prediction 464 492 - -
Prci2g3425 896 SMART B3_2 133 235 IPR003340 GO:0003677
Prci2g3425 896 ProSiteProfiles PB1 domain profile. 761 845 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3425 Prci-Chr2 43656933 43667749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3425 102 855 B3 DNA Binding Superfamily AT5G37020 54.414 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci2g3425 AUX_IAA 3.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3425 - - pcin:129302482 1653.26