LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci2g3416	ATGATCAGAACAATTTTTAGAAGATCTCGTTCCTTAGTCTCAAGGCGCGCTTTCGCCGCCTCCACGTTGATCGAGTATCAGCATCACCTCACTTCATCAGACGCTGGGTATGGTGGGGTTGCTGGTAATGACCTTCGGCCATTCTCCAACTTGTTTGGTTTTGGTGGGTTCAAGTCATGCGCATTTCATTCCCCTGCGGGGCCGTTGAATTTCCGGGCGTCATTGGTTCCTCGTGCCCAGTACGCTGTCGATGATTACTCTTTCGAAGAAGGGCCCAAGGGAAACAATGATGATGGCCTTGATATATCGAAGCTCGGTATTTCTGAGGATATCGTGTCTGCTTTGGCCAAGAGAGGTATAACGAAGCTCTTCCCTATACAGAGAGCTGTTCTTGAACCTGCCATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACGGGAACTGGGAAAACTCTCGCATTTGGGATACCTATCTTGGACAAGATCATTCAGTATAATGCTAAGCATGGACGAGGAAGGGATCCTCTTGCTTTGGTTTTGGCACCAACTAGAGAACTTGCTCGGCAGGTTGAAAAGGAGTTCTATGAGTCAGCACCTAATTTGGATACAATTTGTGTTTATGGAGGAACACCCATTTCGCGTCAAATGAGGCAGCTAGACTATGGTGTTGATGTTGCAGTAGGCACACCAGGTCGAATTATCGACCTTCTTAACAGAGGTGCTCTAAATTTGAAGGACGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGCTTTCAGGAAGATGTTGAAAAAATCTTGGAGAGGTTGCCTCCCAAACGCCAAACGCTTATGTTCTCAGCAACAATGCCTTCTTGGATAAAGCAGATTTCTCGCAACTACTTAAATAATCCAATAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCTGATGGAATTACATTATACTCAATTGCCTCAGATATGTATGGAAAAGCAGGAATTATTGAAACCCTAGTAACTGAACACGCTAAAGGAGGAAAGTGTATTGTTTTCACCCAAACCAAACGTGATGCTGATCGACTATCATATTCTATGTCAAGAAGCCTTAGATGTGAGGCCTTGCATGGAGATATTTCACAAGCTCAGAGGGAAAGAACTCTTTCTGGCTTTAGAGAAGGCCATTTCAACGTTTTAGTGGCAACTGATGTTGCCTCACGCGGTCTTGATATACCGAATGTTGACCTTGTAATACATTTTGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCGGGGCGAACAGGTCGAGCAGGGAAGAAAGGAACTGCTATCCTTATTTATACTCAGGATCAATCCAGGGCTGTCAAGATTATTGAGCGTGATGTTGGCAGCAGATTTTCTGAGCTACCGAGAATTACTGCTCAAGGTGAATCAGTAGGCATGTTTAATAGCACGGGTGGGGGTCGATTTAGCAATTTTGGAGGCATGCAGGATCGTAGATTTGGTGATTCAGGTTTTGGCAGCCGTGGTCCTGGTTTAGGCCGCTCCAGCTTTGGTAATTCTGATGATAGGGGAAGGTTTGGTGGACCTAATTCTGGTCGTTTCAGCAGCCCTGGATCAAGAAGTGGGTTTGGGGGATCCTTTGGTAATTCTTCGGGCAATGGACCAAGCTCTGGACGTTTTGGCTCCTTTGGTGGCTTTGGCTCTGGACCATCAGACAGTGGCTTTGGCAAATCTAGTGTAGACCGAGCAGGAAACACGGGAGGATTTGGGTTTAGTCGTCGAAGCGGCAGCAGTGGATTTGGTGGTTCAGATCGTTCTGGTGGTTTTGGCTCAGGTCAATCTAGTGCATTTGGTGCCAGAGATTCAAACCAAAGGAATGCCTTTGGTGACTCTCGAGGTAGTGATGGTTTTGGTGCTTTTGGGAATGAGCAGAATAATGATCAAAGCAGTGGGAGAAGGCCATTCTGA	1974	0.4564	MIRTIFRRSRSLVSRRAFAASTLIEYQHHLTSSDAGYGGVAGNDLRPFSNLFGFGGFKSCAFHSPAGPLNFRASLVPRAQYAVDDYSFEEGPKGNNDDGLDISKLGISEDIVSALAKRGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQYNAKHGRGRDPLALVLAPTRELARQVEKEFYESAPNLDTICVYGGTPISRQMRQLDYGVDVAVGTPGRIIDLLNRGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNYLNNPITIDLVGDSDQKLADGITLYSIASDMYGKAGIIETLVTEHAKGGKCIVFTQTKRDADRLSYSMSRSLRCEALHGDISQAQRERTLSGFREGHFNVLVATDVASRGLDIPNVDLVIHFDLPNNSEIFVHRSGRTGRAGKKGTAILIYTQDQSRAVKIIERDVGSRFSELPRITAQGESVGMFNSTGGGRFSNFGGMQDRRFGDSGFGSRGPGLGRSSFGNSDDRGRFGGPNSGRFSSPGSRSGFGGSFGNSSGNGPSSGRFGSFGGFGSGPSDSGFGKSSVDRAGNTGGFGFSRRSGSSGFGGSDRSGGFGSGQSSAFGARDSNQRNAFGDSRGSDGFGAFGNEQNNDQSSGRRPF	657

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci2g3416	657	MobiDBLite	consensus disorder prediction	494	657	-	-
	Prci2g3416	657	Pfam	DEAD/DEAH box helicase	124	293	IPR011545	GO:0003676\|GO:0005524
	Prci2g3416	657	CDD	DEADc	111	306	-	-
	Prci2g3416	657	Pfam	Helicase conserved C-terminal domain	334	439	IPR001650	-
	Prci2g3416	657	Gene3D	-	101	309	IPR027417	-
	Prci2g3416	657	SMART	helicmild6	359	439	IPR001650	-
	Prci2g3416	657	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	131	305	IPR014001	-
	Prci2g3416	657	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	100	128	IPR014014	GO:0003724
	Prci2g3416	657	MobiDBLite	consensus disorder prediction	640	657	-	-
	Prci2g3416	657	CDD	SF2_C_DEAD	341	448	-	-
	Prci2g3416	657	FunFam	ATP-dependent RNA helicase RhlE	93	308	-	-
	Prci2g3416	657	MobiDBLite	consensus disorder prediction	534	560	-	-
	Prci2g3416	657	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	334	478	IPR001650	-
	Prci2g3416	657	SMART	ultradead3	119	322	IPR014001	-
	Prci2g3416	657	MobiDBLite	consensus disorder prediction	592	632	-	-
	Prci2g3416	657	Gene3D	-	320	479	IPR027417	-
	Prci2g3416	657	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	174	459	IPR027417	-
	Prci2g3416	657	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	101	476	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci2g3416	Prci-Chr2	43588867	43594691	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci2g3416	105	471	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.600	1.01e-68	228

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci2g3416	-		-	gmx:100786041	795.423