Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3412 ATGGCTTTCTTCAGGAACTTTTCAAATGAAACAGTTTCACATAGTGTCCTGGAAGAAAAAGGCCAAGGACAAAATGCTGATAGAATCCGCAAATCAGTTGGCAACGAATGTGCTGATGCATCTTCAAGTGAGAAAGAGTTCGATATGAACATGGATGCTCAGTATCATAGTGATGGTGAACCAGATGGTAGACTGCAAAATGAGGCTACAGCTGATGAAGTTGGTGACATCCAGTCTACTGGAAGTAAAACTGCTATGGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCCAGCCTATGAGCCATCAGAATGGGCAGGAATATGGGCAAGAATCACAAAGTGGATCAGACTATAGAAATGCAGAAGGGGCTGAAGATAATTCATCAGATGGAAGAGGGGAAAGATTAGATTCAGAAGATGATGATGGACAGAAAGAAGCAGGAAAAGGTCCAAGAGGCCATTCTGATGTGCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGAAGAGCACAGTGATTCATTGCATTACAGGGGGATTCATCAACCGACTGGATCAAATTCGTGGCCTCAACAGATGTCTAATACTGTCAATAGTCGTGCAAATAGGAATTCTAGGATTTCAGATGTTGTGGAAGATGATGAAGGTGATGGTGATAATGATAATGATGACGGTGATGCTGATTATGAAGAGGAGGATGAAGCAGATGAAGATGATCCTGATGATGTGGACTTTGAGCCTGCCACAAGTGGTCGTTCTGCAAACAAGGATAGAGATTGGGAGGGTGAAGAATCAGATGAAGATGATGATATTATTGATAATGTAGATGTTTCAGATGACGATGATACCTACTATGCAAAAAAACCTTCGGGGAGGCAACGTGGTAAAGTGGGACGAACTGTAAAACCTACTAGAGAACGCAAATCATTTGCTGCACCTGCTCGGCAAAGAAAACCTAAAACATCTTTTGAAGAGGATGAATCAACAGCAGAGGATTCTGAGAGTGAAAGTGATGATTTCAAAAGCATGAGAAAGAGAGGTGCTAATGCTCGCAAGAATAATGTTCGTTCTTCTGCGGCTGCAAGTTTTTCTGGCCGGAACAGTGAGGTTCGCACATCTAGCAGGACAGTTAGGAAGAAGGTGTCATATGTTGAAAGTGAAGAAAGTGAAGAAGCAGATGAAGGAAAGAAGAAGAAGTCCCAAAAAGAAGAACTTGAAGAGGAAGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCTAAGGGCATGGCTGATGAGGCGCAGAGGAATAATAGATCAACAGAACCTGTTTTATGGAGTAATTTGTTTGATTCTGAACCTGATTGGAATGAGATGGAATTCTTAATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAATGGAAGTCATTTGCTGAACTTCAAAATCTCAGTGGTTTTAAGAAGGTTTTAAATTATACGAAGAAAGTGACAGAGGACATTAGGTACAGGAACACAATTTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAATAGTCAGGTGGAAAGAATCATTGCAGATCGAATCAGCAAAGATAATTCTGGCAATGTTATTATAGAATATTTGGTCAAGTGGCAAGGGCTATCTTATGCTGAAGTGACATGGGAGAAGGACATAGATATTGCTTTTGCTCAACATGCTATTGATGAGTACAAGGCTCGTGAGGCTGCAATGTCTGTTCAAGGAAAGATGGTAGATCTACAACGCAAGAAGAGTAAAGCAAGTTTGAGGAAGCTTGATGAACAGCCTGAGTGGTTGAAGGGGGGGAAGCTTCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAACGACACAAATGTTATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTTCAGAATGCCCAGCAAATCCATGGTCCCTTTCTTGTAGTTGTCCCTTTGTCTACTTTGTCAAACTGGGCTAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTAATCGAGCAGGGCGAGAGGTTTGTCAACAGAATGAATTTTATAATGATAAAAAGGTTGGCAGGCTTATAAAATTTAATGCCCTCTTGACTACATACGAAGTGGTTCTGAAGGATAAAGCTGTTCTCTCCAAGATTAAATGGAGTTATCTGATGGTTGATGAGGCTCATAGACTGAAAAATAGCGAGGCTCAGCTGTACACTACACTTTCAGAGTTTAGCACCAAAAACAAATTGCTTATCACTGGTACTCCACTACAGAACAGTGTTGAAGAGCTATGGGCTTTGCTTCATTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCCTTCAATGAGAATGAGCTTGCCAATCTTCACATGGAATTGAGGCCTCACATACTCCGAAGAGTTATCAAAGATGTAGAGAAATCATTGCCCCCAAAAATTGAGCGTATACTTAGAGTTGAAATGTCTCCTCTTCAGAAACAGTATTACAAGTGGATTTTGGAACGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTGCTTAATATTGTGGTTGAATTAAAGAAGTGCTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGGGGGGACTCAGGAAGTAGTGATAGCAGTAAGCTTGAGAGAATTGTCTTCAGCAGTGGGAAGCTTGTCATACTTGATAAGCTACTTGTTAGATTACATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGCTGGATATACTGGCTGAGTATATGTCACTTAGAGGATTTCAATTCCAGAGGCTTGATGGCAGTACAAAGGCTGAGTTACGACAGCAGGCAATGGATCATTTTAATGCACCTGGTAGTGATGACTTTTGCTTCCTTCTTTCAACTAGAGCAGGAGGTCTGGGTATCAATCTTGCCACAGCAGACACTGTCATAATATTTGATTCAGACTGGAATCCTCAAAATGACCTCCAGGCCATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTCGAGGAAGATATTTTGGAACGAGCTAAGAAAAAGATGGTCCTCGACCATCTGGTCATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCTAAAAAAGGAGGAGGTCTTTTTGACAAAAATGAGCTGTCAGCAATTTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAGAGTAAGACGCGGCTTTTAAGTTTGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAGCAAGGGCATGAGTTATTGAGTGCCTTTAAGGTTGCTAATTTCTGCAATGATGAAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAACCTGATGCCATAGCCCAAGCTGAAGAAGCTTTGGCCCCACGTGCTGCAAGGAACATTAAAAGCTATGCAGAGGCCAATCAATCTGAAAGAAGTAGTAAACGAAAAAAGAAAGAACCAGAGCCTTCTGAGAGAGTTCAGAAACGCCGGAAAGCAGACTATTCAGCTCCTGCAACACCAATGATTGAGGGAGCATCAGCCCAAGTGAGAAGTTGGTCATATGGGAATGTATCTAAAAGAGATGCATTACGATTTTATCGTGCAGTTATGAAATTTGGGAATGAGAGCCAAATCCACTTAATAGCTGCTGAGGTTAGTGGGCCATTTGCAGCTGCTCCGCCTGAAGCTCAGATTGAAATTTTCAATTCTTTAATTGATGGCTGTAAAGAAGCAGTGGAACTAGGAAGTATGGACCCAAAGGGGCCTCTTTTGGATTTTTTTGGTGTCCCAGTGAAGGCAAATGATCTGCTTAATCGTGTTCAAGAACTCCAACTGTTAGCAAAGCGCATTAGTAGATATGAAGATCCTGTTGCACAGTTTCGTGTTTTAACATACCTTAAACCTTCAAACTGGTCTAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATTCATTACCATGGATTTGGTAATTGGGAAAAGATACGATTAGATGAAAGGCTTGGCCTCATGAAGAAGATTGCACCAGTTGAACTTCATCACCATGAAACTTTCTTGCCACGTGCTCCCAATTTGAGAGATCGTGCTAATGCCCTTTTGGAACAAGAGCTTGTTGTTCTGGGTGGTAAAAATGCCAATAGTAAAGGAGGTCGCAAGGCTTCCAAGAAGGAGAGGGAACATCTTATGACCATTTCGGTGGCACGTGGGCCAGAGAAGAGAAAATTAAGTTCTTCTAAAGTTAATGTCCAAATGAGAAAGGATAGATCCCTGAGGCCCCAGAGGATTGAACCAATAGTAAAAGAAGAGGGTGAAATGTCTGACAATGACGAAGTGTATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAGGATGTGATGATTGATGAAATGAAAACCTTGAAACGTCTTCACAGGTTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCCAAAATCCGCAATTACTTACAGCTTCTTGGGCTGAGGATAGATCAAATTGTGTTAGAGCATGAAGAGGAACCTTATAAGCAAGATAGGATGACGACGCGATTGTGGAACTATGTCTCTACCTTCTCCCATCTTTCAGGGGAGAGGCTGCATCAGATCTATTCCAAGCTTAAACAGGAGCAACAAGATGAAGCTGGGGCTGGCCCCTCTCACATCAATGGATCGGTCTCTGGTCCATTTGGGAGAAACCACCCTAGTTCATTCTCTCGCCATGTGGAGAGACAAAGAGGATACAAAAATGTGACTTCCTATCAAATGCCAGAACCAATTCACAGTACAGGAAAATCTGAGGCTTGGAAGCGGAGGAGGAGAGGAGAAGGTGATGGTCATTTCCAAGGGCAGCCACCATCTCAGAGAGCTATGGGTAACGGAATCCAAACATCTGACCCTAACTCACTGGGGATTCTTGGGGCTGGACCATCAGATAGACGTCTCGTCAGCGAGAAACCTTATCGGACACGACCTGGCGGGGCTCCTCCGAGACAGGGTTTCTCTTCCAGCATAAAATAG 5265 0.419 MAFFRNFSNETVSHSVLEEKGQGQNADRIRKSVGNECADASSSEKEFDMNMDAQYHSDGEPDGRLQNEATADEVGDIQSTGSKTAMVGRWGSTFWKDCQPMSHQNGQEYGQESQSGSDYRNAEGAEDNSSDGRGERLDSEDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQEEHSDSLHYRGIHQPTGSNSWPQQMSNTVNSRANRNSRISDVVEDDEGDGDNDNDDGDADYEEEDEADEDDPDDVDFEPATSGRSANKDRDWEGEESDEDDDIIDNVDVSDDDDTYYAKKPSGRQRGKVGRTVKPTRERKSFAAPARQRKPKTSFEEDESTAEDSESESDDFKSMRKRGANARKNNVRSSAAASFSGRNSEVRTSSRTVRKKVSYVESEESEEADEGKKKKSQKEELEEEDGDSIEKVLWHQPKGMADEAQRNNRSTEPVLWSNLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVTEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIIEYLVKWQGLSYAEVTWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRAGREVCQQNEFYNDKKVGRLIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGGLFDKNELSAILRFGAEELFKEERNDEESKTRLLSLDIDEILERAEKVEEKEAEGEQGHELLSAFKVANFCNDEDDGSFWSRWIKPDAIAQAEEALAPRAARNIKSYAEANQSERSSKRKKKEPEPSERVQKRRKADYSAPATPMIEGASAQVRSWSYGNVSKRDALRFYRAVMKFGNESQIHLIAAEVSGPFAAAPPEAQIEIFNSLIDGCKEAVELGSMDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPVAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELVVLGGKNANSKGGRKASKKEREHLMTISVARGPEKRKLSSSKVNVQMRKDRSLRPQRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGLRIDQIVLEHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQQDEAGAGPSHINGSVSGPFGRNHPSSFSRHVERQRGYKNVTSYQMPEPIHSTGKSEAWKRRRRGEGDGHFQGQPPSQRAMGNGIQTSDPNSLGILGAGPSDRRLVSEKPYRTRPGGAPPRQGFSSSIK 1754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3412 1754 SMART helicmild6 965 1049 IPR001650 -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 355 374 - -
Prci2g3412 1754 Coils Coil 391 411 - -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 1209 1244 - -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 124 162 - -
Prci2g3412 1754 CDD CD1_tandem 412 492 - -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 72 87 - -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 215 247 - -
Prci2g3412 1754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 1125 IPR027417 -
Prci2g3412 1754 ProSiteProfiles Chromo and chromo shadow domain profile. 527 591 IPR000953 -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 41 69 - -
Prci2g3412 1754 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 850 1080 - -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 375 417 - -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 18 417 - -
Prci2g3412 1754 Pfam Helicase conserved C-terminal domain 936 1049 IPR001650 -
Prci2g3412 1754 Pfam SNF2-related domain 638 907 IPR000330 GO:0005524|GO:0140658
Prci2g3412 1754 SUPERFAMILY Chromo domain-like 506 582 IPR016197 -
Prci2g3412 1754 SMART DUF4208_2 1517 1622 IPR025260 -
Prci2g3412 1754 FunFam Photoperiod-independent early flowering 1 589 863 - -
Prci2g3412 1754 Pfam Domain of unknown function (DUF4208) 1529 1621 IPR025260 -
Prci2g3412 1754 Gene3D - 529 581 - -
Prci2g3412 1754 Gene3D - 610 849 IPR038718 -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 1701 1719 - -
Prci2g3412 1754 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 749 758 IPR002464 -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 97 123 - -
Prci2g3412 1754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 840 IPR027417 -
Prci2g3412 1754 Coils Coil 1079 1099 - -
Prci2g3412 1754 ProSiteProfiles Chromo and chromo shadow domain profile. 414 493 IPR000953 -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 182 208 - -
Prci2g3412 1754 Gene3D - 850 1080 IPR027417 -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 1679 1694 - -
Prci2g3412 1754 CDD CD2_tandem 525 581 - -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 264 282 - -
Prci2g3412 1754 SMART chromo_7 525 584 IPR000953 -
Prci2g3412 1754 FunFam protein CHROMATIN REMODELING 5 isoform X2 529 581 - -
Prci2g3412 1754 CDD SF2_C_SNF 926 1060 - -
Prci2g3412 1754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 631 803 IPR014001 -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 302 329 - -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 1214 1238 - -
Prci2g3412 1754 FunFam Chromo domain-containing protein 1 402 527 - -
Prci2g3412 1754 SUPERFAMILY Chromo domain-like 411 494 IPR016197 -
Prci2g3412 1754 SMART ultradead3 615 814 IPR014001 -
Prci2g3412 1754 Pfam Chromo (CHRromatin Organisation MOdifier) domain 528 582 IPR023780 -
Prci2g3412 1754 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 180 1684 - -
Prci2g3412 1754 MobiDBLite consensus disorder prediction 1624 1754 - -
Prci2g3412 1754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 939 1090 IPR001650 -
Prci2g3412 1754 Gene3D - 400 526 - -
Prci2g3412 1754 Gene3D - 1346 1451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3412 Prci-Chr2 43518285 43537254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3412 641 1076 RAD5 or RAD16-like Gene Family AT1G02670 26.139 2.09e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci2g3412 SNF2_N 3.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3412 K11367 - gmx:100808039 2774.58