Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3411 ATGGCTTTCTTCAGGAACTTTTCAAATGAAACAGTTTCACATAGTGTCCTGGAAGAAAAAGGCCAAGGACAAAATGCTGATAGAATCCGCAAATCAGTTGGCAACGAATGTGCTGATGCATCTTCAAGTGAGAAAGAGTTCGATATGAACATGGATGCTCAGTATCATAGTGATGGTGAACCAGATGGTAGACTGCAAAATGAGGCTACAGCTGATGAAGTTGGTGACATCCAGTCTACTGGAAGTAAAACTGCTATGGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCCAGCCTATGAGCCATCAGAATGGGCAGGAATATGGGCAAGAATCACAAAGTGGATCAGACTATAGAAATGCAGAAGGGGCTGAAGATAATTCATCAGATGGAAGAGGGGAAAGATTAGATTCAGAAGATGATGATGGACAGAAAGAAGCAGGAAAAGGTCCAAGAGGCCATTCTGATGTGCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGAAGAGCACAGTGATTCATTGCATTACAGGGGGATTCATCAACCGACTGGATCAAATTCGTGGCCTCAACAGATGTCTAATACTGTCAATAGTCGTGCAAATAGGAATTCTAGGATTTCAGATGTTGTGGAAGATGATGAAGGTGATGGTGATAATGATAATGATGACGGTGATGCTGATTATGAAGAGGAGGATGAAGCAGATGATGATCCTGATGATGTGGACTTTGAGCCTGCCACAAGTGGTCGTTCTGCAAACAAGGATAGAGATTGGGAGGGTGAAGAATCAGATGAAGATGATGATATTATTGATAATGTAGATGTTTCAGATGACGATGATACCTACTATGCAAAAAAACCTTCGGGGAGGCAACGTGGTAAAGTGGGACGAACTGTAAAACCTACTAGAGAACGCAAATCATTTGCTGCACCTGCTCGGCAAAGAAAACCTAAAACATCTTTTGAAGAGGATGAATCAACAGCAGAGGATTCTGAGAGTGAAAGTGATGATTTCAAAAGCATGAGAAAGAGAGGTGCTAATGCTCGCAAGAATAATGTTCGTTCTTCTGCGGCTGCAAGTTTTTCTGGCCGGAACAGTGAGGTTCGCACATCTAGCAGGACAGTTAGGAAGAAGGTGTCATATGTTGAAAGTGAAGAAAGTGAAGAAGCAGATGAAGGAAAGAAGAAGAAGTCCCAAAAAGAAGAACTTGAAGAGGAAGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCTAAGGGCATGGCTGATGAGGCGCAGAGGAATAATAGATCAACAGAACCTGTTTTATGGAGTAATTTGTTTGATTCTGAACCTGATTGGAATGAGATGGAATTCTTAATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAATGGAAGTCATTTGCTGAACTTCAAAATCTCAGTGGTTTTAAGAAGGTTTTAAATTATACGAAGAAAGTGACAGAGGACATTAGGTACAGGAACACAATTTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAATAGTCAGGTGGAAAGAATCATTGCAGATCGAATCAGCAAAGATAATTCTGGCAATGTTATTATAGAATATTTGGTCAAGTGGCAAGGGCTATCTTATGCTGAAGTGACATGGGAGAAGGACATAGATATTGCTTTTGCTCAACATGCTATTGATGAGTACAAGGCTCGTGAGGCTGCAATGTCTGTTCAAGGAAAGATGGTAGATCTACAACGCAAGAAGAGTAAAGCAAGTTTGAGGAAGCTTGATGAACAGCCTGAGTGGTTGAAGGGGGGGAAGCTTCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAACGACACAAATGTTATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTTCAGAATGCCCAGCAAATCCATGGTCCCTTTCTTGTAGTTGTCCCTTTGTCTACTTTGTCAAACTGGGCTAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTAATCGAGCAGGGCGAGAGGTTTGTCAACAGAATGAATTTTATAATGATAAAAAGGTTGGCAGGCTTATAAAATTTAATGCCCTCTTGACTACATACGAAGTGGTTCTGAAGGATAAAGCTGTTCTCTCCAAGATTAAATGGAGTTATCTGATGGTTGATGAGGCTCATAGACTGAAAAATAGCGAGGCTCAGCTGTACACTACACTTTCAGAGTTTAGCACCAAAAACAAATTGCTTATCACTGGTACTCCACTACAGAACAGTGTTGAAGAGCTATGGGCTTTGCTTCATTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCCTTCAATGAGAATGAGCTTGCCAATCTTCACATGGAATTGAGGCCTCACATACTCCGAAGAGTTATCAAAGATGTAGAGAAATCATTGCCCCCAAAAATTGAGCGTATACTTAGAGTTGAAATGTCTCCTCTTCAGAAACAGTATTACAAGTGGATTTTGGAACGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTGCTTAATATTGTGGTTGAATTAAAGAAGTGCTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGGGGGGACTCAGGAAGTAGTGATAGCAGTAAGCTTGAGAGAATTGTCTTCAGCAGTGGGAAGCTTGTCATACTTGATAAGCTACTTGTTAGATTACATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGCTGGATATACTGGCTGAGTATATGTCACTTAGAGGATTTCAATTCCAGAGGCTTGATGGCAGTACAAAGGCTGAGTTACGACAGCAGGCAATGGATCATTTTAATGCACCTGGTAGTGATGACTTTTGCTTCCTTCTTTCAACTAGAGCAGGAGGTCTGGGTATCAATCTTGCCACAGCAGACACTGTCATAATATTTGATTCAGACTGGAATCCTCAAAATGACCTCCAGGCCATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTCGAGGAAGATATTTTGGAACGAGCTAAGAAAAAGATGGTCCTCGACCATCTGGTCATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCTAAAAAAGGAGGAGGTCTTTTTGACAAAAATGAGCTGTCAGCAATTTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAGAGTAAGACGCGGCTTTTAAGTTTGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAGCAAGGGCATGAGTTATTGAGTGCCTTTAAGGTTGCTAATTTCTGCAATGATGAAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAACCTGATGCCATAGCCCAAGCTGAAGAAGCTTTGGCCCCACGTGCTGCAAGGAACATTAAAAGCTATGCAGAGGCCAATCAATCTGAAAGAAGTAGTAAACGAAAAAAGAAAGAACCAGAGCCTTCTGAGAGAGTTCAGAAACGCCGGAAAGCAGACTATTCAGCTCCTGCAACACCAATGATTGAGGGAGCATCAGCCCAAGTGAGAAGTTGGTCATATGGGAATGTATCTAAAAGAGATGCATTACGATTTTATCGTGCAGTTATGAAATTTGGGAATGAGAGCCAAATCCACTTAATAGCTGCTGAGGTTAGTGGGCCATTTGCAGCTGCTCCGCCTGAAGCTCAGATTGAAATTTTCAATTCTTTAATTGATGGCTGTAAAGAAGCAGTGGAACTAGGAAGTATGGACCCAAAGGGGCCTCTTTTGGATTTTTTTGGTGTCCCAGTGAAGGCAAATGATCTGCTTAATCGTGTTCAAGAACTCCAACTGTTAGCAAAGCGCATTAGTAGATATGAAGATCCTGTTGCACAGTTTCGTGTTTTAACATACCTTAAACCTTCAAACTGGTCTAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATTCATTACCATGGATTTGGTAATTGGGAAAAGATACGATTAGATGAAAGGCTTGGCCTCATGAAGAAGATTGCACCAGTTGAACTTCATCACCATGAAACTTTCTTGCCACGTGCTCCCAATTTGAGAGATCGTGCTAATGCCCTTTTGGAACAAGAGCTTGTTGTTCTGGGTGGTAAAAATGCCAATAGTAAAGGAGGTCGCAAGGCTTCCAAGAAGGAGAGGGAACATCTTATGACCATTTCGGTGGCACGTGGGCCAGAGAAGAGAAAATTAAGTTCTTCTAAAGTTAATGTCCAAATGAGAAAGGATAGATCCCTGAGGCCCCAGAGGATTGAACCAATAGTAAAAGAAGAGGGTGAAATGTCTGACAATGACGAAGTGTATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAGGATGTGATGATTGATGAAATGAAAACCTTGAAACGTCTTCACAGGTTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCCAAAATCCGCAATTACTTACAGCTTCTTGGGCTGAGGATAGATCAAATTGTGTTAGAGCATGAAGAGGAACCTTATAAGCAAGATAGGATGACGACGCGATTGTGGAACTATGTCTCTACCTTCTCCCATCTTTCAGGGGAGAGGCTGCATCAGATCTATTCCAAGCTTAAACAGGAGCAACAAGATGAAGCTGGGGCTGGCCCCTCTCACATCAATGGATCGGTCTCTGGTCCATTTGGGAGAAACCACCCTAGTTCATTCTCTCGCCATGTGGAGAGACAAAGAGGATACAAAAATGTGACTTCCTATCAAATGCCAGAACCAATTCACAGTACAGGAAAATCTGAGGCTTGGAAGCGGAGGAGGAGAGGAGAAGGTGATGGTCATTTCCAAGGGCAGCCACCATCTCAGAGAGCTATGGGTAACGGAATCCAAACATCTGACCCTAACTCACTGGGGATTCTTGGGGCTGGACCATCAGATAGACGTCTCGTCAGCGAGAAACCTTATCGGACACGACCTGGCGGGGCTCCTCCGAGACAGGGTTTCTCTTCCAGCATAAAATAG 5262 0.419 MAFFRNFSNETVSHSVLEEKGQGQNADRIRKSVGNECADASSSEKEFDMNMDAQYHSDGEPDGRLQNEATADEVGDIQSTGSKTAMVGRWGSTFWKDCQPMSHQNGQEYGQESQSGSDYRNAEGAEDNSSDGRGERLDSEDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQEEHSDSLHYRGIHQPTGSNSWPQQMSNTVNSRANRNSRISDVVEDDEGDGDNDNDDGDADYEEEDEADDDPDDVDFEPATSGRSANKDRDWEGEESDEDDDIIDNVDVSDDDDTYYAKKPSGRQRGKVGRTVKPTRERKSFAAPARQRKPKTSFEEDESTAEDSESESDDFKSMRKRGANARKNNVRSSAAASFSGRNSEVRTSSRTVRKKVSYVESEESEEADEGKKKKSQKEELEEEDGDSIEKVLWHQPKGMADEAQRNNRSTEPVLWSNLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVTEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIIEYLVKWQGLSYAEVTWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRAGREVCQQNEFYNDKKVGRLIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGGLFDKNELSAILRFGAEELFKEERNDEESKTRLLSLDIDEILERAEKVEEKEAEGEQGHELLSAFKVANFCNDEDDGSFWSRWIKPDAIAQAEEALAPRAARNIKSYAEANQSERSSKRKKKEPEPSERVQKRRKADYSAPATPMIEGASAQVRSWSYGNVSKRDALRFYRAVMKFGNESQIHLIAAEVSGPFAAAPPEAQIEIFNSLIDGCKEAVELGSMDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPVAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELVVLGGKNANSKGGRKASKKEREHLMTISVARGPEKRKLSSSKVNVQMRKDRSLRPQRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGLRIDQIVLEHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQQDEAGAGPSHINGSVSGPFGRNHPSSFSRHVERQRGYKNVTSYQMPEPIHSTGKSEAWKRRRRGEGDGHFQGQPPSQRAMGNGIQTSDPNSLGILGAGPSDRRLVSEKPYRTRPGGAPPRQGFSSSIK 1753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3411 1753 SUPERFAMILY Chromo domain-like 410 493 IPR016197 -
Prci2g3411 1753 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 849 1079 - -
Prci2g3411 1753 CDD CD2_tandem 524 580 - -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 1623 1753 - -
Prci2g3411 1753 FunFam protein CHROMATIN REMODELING 5 isoform X2 528 580 - -
Prci2g3411 1753 FunFam Photoperiod-independent early flowering 1 588 862 - -
Prci2g3411 1753 SMART DUF4208_2 1516 1621 IPR025260 -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 1700 1718 - -
Prci2g3411 1753 Gene3D - 1345 1450 - -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 124 162 - -
Prci2g3411 1753 Coils Coil 1078 1098 - -
Prci2g3411 1753 Gene3D - 528 580 - -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 374 416 - -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 41 69 - -
Prci2g3411 1753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 630 802 IPR014001 -
Prci2g3411 1753 Gene3D - 399 525 - -
Prci2g3411 1753 CDD CD1_tandem 411 491 - -
Prci2g3411 1753 Gene3D - 849 1079 IPR027417 -
Prci2g3411 1753 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 184 1683 - -
Prci2g3411 1753 SMART ultradead3 614 813 IPR014001 -
Prci2g3411 1753 Pfam SNF2-related domain 637 906 IPR000330 GO:0005524|GO:0140658
Prci2g3411 1753 MobiDBLite consensus disorder prediction 215 246 - -
Prci2g3411 1753 SUPERFAMILY Chromo domain-like 505 581 IPR016197 -
Prci2g3411 1753 Gene3D - 609 848 IPR038718 -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 95 416 - -
Prci2g3411 1753 Pfam Helicase conserved C-terminal domain 935 1048 IPR001650 -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 97 123 - -
Prci2g3411 1753 Pfam Domain of unknown function (DUF4208) 1528 1620 IPR025260 -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 182 208 - -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 301 328 - -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 1213 1237 - -
Prci2g3411 1753 ProSiteProfiles Chromo and chromo shadow domain profile. 526 590 IPR000953 -
Prci2g3411 1753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1124 IPR027417 -
Prci2g3411 1753 Coils Coil 390 410 - -
Prci2g3411 1753 ProSiteProfiles Chromo and chromo shadow domain profile. 413 492 IPR000953 -
Prci2g3411 1753 SMART helicmild6 964 1048 IPR001650 -
Prci2g3411 1753 FunFam Chromo domain-containing protein 1 401 526 - -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 1678 1693 - -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 15 83 - -
Prci2g3411 1753 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 748 757 IPR002464 -
Prci2g3411 1753 SMART chromo_7 524 583 IPR000953 -
Prci2g3411 1753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 839 IPR027417 -
Prci2g3411 1753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 938 1089 IPR001650 -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 263 281 - -
Prci2g3411 1753 CDD SF2_C_SNF 925 1059 - -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 354 373 - -
Prci2g3411 1753 MobiDBLite consensus disorder prediction 1208 1243 - -
Prci2g3411 1753 Pfam Chromo (CHRromatin Organisation MOdifier) domain 527 581 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3411 Prci-Chr2 43518285 43537254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3411 640 1075 RAD5 or RAD16-like Gene Family AT1G02670 26.139 2.04e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci2g3411 SNF2_N 3.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3411 K11367 - gmx:100808039 2774.58