Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3396 ATGTCGCGGACTGATAGAATGATGTCGGATCTTAACAAAACTGGTCCTGTGGAAAGAGACACTGAACAGGCCATTACCGCCTTAAAGAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGTCCCTTCCGCCTTTCAAATGATGAATCTGTTTTAATATGGTTCTCAGGGAAGGAGGAGAAACACCTTAAACTTAGCCACGTGTCCAGAATCATCTCTGGACAGCGCACACCAATCTTTCAAAGATATCCACGGCCAGAAAAGGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAGGCTGAAGTTTGGTTCAGTGGTTTGAAAGCATTAATATCGCGCAGCCATCACCGGAAGTGGAGAACAGAATCAAGAAGTGATGGTATTCCTTCCGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTAAGTTCTCCATTTGGTAGTAATGAAAGCTTACAGAAGGATAGTGGAGATCACCTTCGTCTTCATAGCCCTTATGAGAGTCCCCCTAAGAATGGTTTGGATAAAGCATTATCTGATGTGATTCTGTATGCTGTTCCTCCAAAGGGATTCTTCCCTCCAGATTCTGCTAGCGGTTCAGTCCACTCTGTGTCATCAGGAGGATCTGATAGTGTACATGGCCATATGAGGACAATGCCTATGGATGCTTTTAGAGTTAGTCTTTCTAGTGCTGTCAGTTCTTCCAGCCAAGGCTCTGGTCATGATGATGGTGATGCATTAGGAGATGTCTTCATTTGGGGAGAAAGCACGGGTGATGGTGTTTTGGGCGGTGGGACTCAGCGAGTTGGTAGTTGTTTAGGTGTGAAAATGGATTCTCTATTGCCCAAAGCCTTGGAATCTGCAGTAGTACTTGACGTGCAGAATATTGCTTGTGGTGGACGGCATGCAGCCTTAGTGACTAAGCAAGGGGAAATTTTTTCATGGGGTGAAGAATCAGGAGGAAGGCTTGGTCATGGTGTTGATTGTGATGTTCTTCATCCAAAGCTTGTAGAAGCTCTAAGTAATACAAATATTGAGCTTGTTGCTTGTGGGGAGTATCATACATGTGCCGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACCTACAATTATGGTCTCCTTGGGCATGGAAATCAAGTGAGCCACTGGGTCCCCAAAAGAGTAAATGGACCCTTGGAGGGCATGCATGTTTCATCTATCTCATGTGGACCATGGCATACTGCAGTTGTAACCTCTTCTGGGCAATTGTTTACTTTTGGTGATGGTACATTTGGTGTTCTAGGTCATGGGGACCGAAAAAGTGTTTCAATACCAAGGGAAGTAGAGTCCCTTAAGGGACTTCGTACTGTGCGTGCTGCCTGTGGCGTTTGGCATACTGCTGCTGTGGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAATTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAGGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGCTCTTGTTGATCCCAACTTTTGTCAAGTTGCTTGCGGACATAGTCTGACTGTTGCACTTACTACACAAGGCCATGTTTATGCAATGGGTAGTCCTGTCTATGGTCAGCTGGGAAATCCCCAAGTTGATGGGAAACTACCAACACGTGTTGAAGGAAAGCTCTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTCTAACTTCGAGGACTGAAGTTTACACTTGGGGCAAGGGTGCAAATGGACGTTTAGGCCATGGGGATACAGATGATAGAAATACCCCAACATTAGTAGAGGCTCTTAAAGACAAGCAAGTCAAAAGTATTGCTTGTGGTACTAATTTTACTGCAGCTATCTGTCTTCATAAATGGGTCTCTGGTGTTGACCAGTCCATGTGTTCTGGTTGCCGCCTGCCATTTAATTTTAAAAGAAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTCTTAAAGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGACAATTGTTTCAATAAGCTAAAAAAAGCTATTGAAACTGATTCTTCATCACATTCTTCTGTGAGCAGAAGAGGAAGTATCAATCAGGGATCGTTGGAGTTTATTGATAAAGATGATAAGTTGGATTCAAGATCTCGTAATCATCCTGCAAGATTCGCTTCAATGGAATCCTTGAAGCAAGTGGAAAGCAGGTCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGTAGTCGTGTCTCACCTGCTCCAAATGGAGGCTCCCAGTGGGGAGCATTGAATATTTCTAAATCTTTCAATCCTGTTTTTGGATCGTCGAAGAAGTTCTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCTCGAGCAACATCCCCCATTTCCAGACGGCCAAGTCCGCCTCGTTCAACTACTCCAACCCCAACACTAGGGGGACTTACTTCCCCAAAGATTGTGGTGGATGATGTTAAGAGGACAAATGATAGCCTCAGTCAGGAGGTTGTTAAATTAAGAGCGCAGGTGGAAAATCTGACTCGCCAAGCTCAACTTCAAGAAATTGAGCTAGAAAGAACTACTAAACAGCTGAAAGAAGCTATAGCCATTGCTGGTGAAGAAACTGCTAAATGTAAGGCAGCAAAGGAAGTGATTAAGTCACTTACTGCTCAGTTGAAGGAAATGGCTGAGAGGCTACCTGTTGGAGCAGCAAGGAACGTCAAATCACCTTCTCTCGCTTCTTTTAGTTCCAGTCCTGGTTCCAATGAAGTCGGCAATGCTTCTGTTGAGCGATTGAATATCCAGGCTACTAATCTAGAACCGGACTTGACAGGATCAAACAATCAGTTACTGTCAAATGGATCAAGCACCATCAATAACCGCATTCAAGGTCACAATAAACAGAGCCAGTCGGATGCATCAAATAGAAATGGAAGCAGAACGAAGGAAGGTGAATCTCGTAATGAGAATGAATGGGTTGAGCAGGATGAACCTGGTGTATATATCACACTTACTTCCCTACCAGGAGGTGTAATAGATCTGAAGAGAGTTCGTTTCAGTCGAAAGCGGTTTAGTGAAAAACAGGCAGAACAATGGTGGGCCGAGAATCGTGCACGTGTGTATGAACAATACAACGTGCGCATGGTTGACAAATCTGCCGTTGGTGTGGGGAGCGAGGATCTGGCTCATTGA 3327 0.4394 MSRTDRMMSDLNKTGPVERDTEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLSSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALSDVILYAVPPKGFFPPDSASGSVHSVSSGGSDSVHGHMRTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGESTGDGVLGGGTQRVGSCLGVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDCDVLHPKLVEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGMHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVDPNFCQVACGHSLTVALTTQGHVYAMGSPVYGQLGNPQVDGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLKKAIETDSSSHSSVSRRGSINQGSLEFIDKDDKLDSRSRNHPARFASMESLKQVESRSSKKNKKLEFNSSRVSPAPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDVKRTNDSLSQEVVKLRAQVENLTRQAQLQEIELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKEMAERLPVGAARNVKSPSLASFSSSPGSNEVGNASVERLNIQATNLEPDLTGSNNQLLSNGSSTINNRIQGHNKQSQSDASNRNGSRTKEGESRNENEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMVDKSAVGVGSEDLAH 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3396 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 729 IPR013083 -
Prci2g3396 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 604 IPR000408 -
Prci2g3396 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 436 485 IPR000408 -
Prci2g3396 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 381 433 IPR000408 -
Prci2g3396 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 500 549 IPR000408 -
Prci2g3396 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 553 601 IPR000408 -
Prci2g3396 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 330 378 IPR000408 -
Prci2g3396 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 606 653 IPR000408 -
Prci2g3396 1108 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 942 - -
Prci2g3396 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Prci2g3396 1108 Coils Coil 867 908 - -
Prci2g3396 1108 MobiDBLite consensus disorder prediction 752 804 - -
Prci2g3396 1108 Pfam Transcription factor regulating root and shoot growth via Pin3 1034 1089 IPR013591 -
Prci2g3396 1108 Gene3D - 19 137 IPR011993 -
Prci2g3396 1108 Gene3D - 393 494 IPR009091 -
Prci2g3396 1108 Gene3D - 217 392 IPR009091 -
Prci2g3396 1108 MobiDBLite consensus disorder prediction 984 1022 - -
Prci2g3396 1108 Coils Coil 923 943 - -
Prci2g3396 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Prci2g3396 1108 Pfam Transcription factor BRX N-terminal domain 918 951 IPR027988 -
Prci2g3396 1108 MobiDBLite consensus disorder prediction 835 862 - -
Prci2g3396 1108 Pfam Unstructured region between BRX_N and BRX domain 959 1028 - -
Prci2g3396 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Prci2g3396 1108 Pfam FYVE zinc finger 657 723 IPR000306 GO:0046872
Prci2g3396 1108 ProSiteProfiles BRX domain profile. 1035 1090 IPR013591 -
Prci2g3396 1108 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Prci2g3396 1108 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Prci2g3396 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Prci2g3396 1108 SUPERFAMILY FYVE/PHD zinc finger 657 728 IPR011011 -
Prci2g3396 1108 MobiDBLite consensus disorder prediction 137 192 - -
Prci2g3396 1108 SUPERFAMILY PH domain-like 20 128 - -
Prci2g3396 1108 SUPERFAMILY RCC1/BLIP-II 267 658 IPR009091 -
Prci2g3396 1108 CDD PH_PLC_plant-like 19 129 - -
Prci2g3396 1108 PRINTS Chromosome condensation regulator RCC1 signature 313 326 IPR000408 -
Prci2g3396 1108 PRINTS Chromosome condensation regulator RCC1 signature 439 453 IPR000408 -
Prci2g3396 1108 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Prci2g3396 1108 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Prci2g3396 1108 PRINTS Chromosome condensation regulator RCC1 signature 382 398 IPR000408 -
Prci2g3396 1108 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Prci2g3396 1108 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Prci2g3396 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 329 IPR000408 -
Prci2g3396 1108 FunFam PH, RCC1 and FYVE domains-containing protein 1 239 490 - -
Prci2g3396 1108 MobiDBLite consensus disorder prediction 143 173 - -
Prci2g3396 1108 MobiDBLite consensus disorder prediction 984 1039 - -
Prci2g3396 1108 MobiDBLite consensus disorder prediction 790 804 - -
Prci2g3396 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 381 IPR000408 -
Prci2g3396 1108 Gene3D - 495 668 IPR009091 -
Prci2g3396 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Prci2g3396 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 436 IPR000408 -
Prci2g3396 1108 SMART fyve_4 655 724 IPR000306 GO:0046872
Prci2g3396 1108 CDD FYVE_like_SF 666 719 - -
Prci2g3396 1108 MobiDBLite consensus disorder prediction 1023 1039 - -
Prci2g3396 1108 FunFam Putative E3 ubiquitin-protein ligase HERC1 663 731 - -
Prci2g3396 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 316 326 IPR000408 -
Prci2g3396 1108 FunFam PH, RCC1 and FYVE domains-containing protein 1 491 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3396 Prci-Chr2 43381839 43391559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3396 927 1099 Major Intrinsic Protein MIP AT1G31880 32.796 1.32e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3396 - - cave:132163343 1948.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g3396 2 43381839 43391559 Prci2g3396 2 43381839 43391559 ECH