Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3394 ATGGAGAAAAATAAGAAAAGAAGGCTTAAAACACCTGCCCAGGTGATGGCCCTGGAAAAATTTTATGATGAGCACAAATATCCCACAGAAGAAATGAAATCAGAACTTGCTGAGGAGTTAGGCTTGACTGAAAAGCAAGTATCTGGATGGTTTTGCCACAGACGGTTAAAAGATAAAAGATTGTTGAAGGATGAAGCATGTGCTAATGGACGGCAAGATCGTTCAAGTGGTGTCATCCAGGACCATGTAAGTGGACTAGGGCAAGATTCATGTGGAAGCACTAAACATGGTGATTATAAGCATCTTGATCTGAAAGAGGTTGAGAGTCATGGCCTCTACAGCAATGACTTTTCTGTTGCAGATATGACTTATGGACGTAATAGACACTATAATGAAGATGTTGGTGGAACTGATAACACATCTTCTGAGAGTAGCTCGTCTTTAAGAGATCAGATGTTCTCTCAAGGGCAGGATCCATATAACATGGAGCCTTCTAGACATCTGACACCTAACAGAGCTCTGCCACCTTTAGTTCCCAAAGCTGCAATTAACATTGGATATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCTGTCAAGAAGCGATTAGGAAGACACTATCAGGAAGATGGTCCACTGCTTAGTGTAGAATTTGATCCAGTTCCTCCAGGGGCATTTGAGTGCCAAATTGCAGATCCAGTTGATGAATCATTCCATACTGCGAATCCTTCTCTTGCCAGTCCTACAGAAATTCCTGCTGGGAAAAGGCAACCTGCCCTTAACTCTATGTATGACTCCAAATATAGTTCCCAAGATTTACATATGGAAGTAGGAGATCTTGGCTCCTTGCATGACGCTGATTTGCTGGATAAGAAACCCCGTCGACACAAGCAAGGGCGGACATTTCAGGGTCATACCAATCATATACCTCATAGGAACTCCTCCCTGGAGTTGTATGAAGATTCTACTAGAGAAGTACCTGCTTATAATACAATGAGGTCTAAACATGGTGTAGGGATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTTTGAAGGGGACCTTGTGGTTAAGCAGGCAGATTCACTTCTGCATCGCTATGATAATGTCAATCCAAAGAAAATTCAGAGAAGTGAATATGTAAAATCTAAGCCTTCAAATTCATTAAGAAATTCTCGCGTTTCTCTTGATACTGAAGAAAGAGGACTATCTTCAAAGATAGCAAAGGAAGAGAAGTTTATTGGAGACAAGAAAGCGAGAAAACAATATCATGATTCAGAGAGAATGAGGATGCTTCCAAATGAAACCACGATTGCAAAAAGAGTTAAAGATGATCTTCCTCAACAACAGAATCTGAAACATGCACTAGTAGCTGAGATGCAACCTCAGAAAAATCGGAGGTCTGCAACAGAGATACTTTCTAGCTTTAGTGAAGATGAAACCGCTGAATCCAGTTCCTCGCTGGACTAA 1497 0.4102 MEKNKKRRLKTPAQVMALEKFYDEHKYPTEEMKSELAEELGLTEKQVSGWFCHRRLKDKRLLKDEACANGRQDRSSGVIQDHVSGLGQDSCGSTKHGDYKHLDLKEVESHGLYSNDFSVADMTYGRNRHYNEDVGGTDNTSSESSSSLRDQMFSQGQDPYNMEPSRHLTPNRALPPLVPKAAINIGYKPSGYLKVKGEIENAAITAVKKRLGRHYQEDGPLLSVEFDPVPPGAFECQIADPVDESFHTANPSLASPTEIPAGKRQPALNSMYDSKYSSQDLHMEVGDLGSLHDADLLDKKPRRHKQGRTFQGHTNHIPHRNSSLELYEDSTREVPAYNTMRSKHGVGMRSDSASNHSDHFEGDLVVKQADSLLHRYDNVNPKKIQRSEYVKSKPSNSLRNSRVSLDTEERGLSSKIAKEEKFIGDKKARKQYHDSERMRMLPNETTIAKRVKDDLPQQQNLKHALVAEMQPQKNRRSATEILSSFSEDETAESSSSLD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3394 498 ProSiteProfiles 'Homeobox' domain profile. 1 61 IPR001356 GO:0003677
Prci2g3394 498 MobiDBLite consensus disorder prediction 466 498 - -
Prci2g3394 498 MobiDBLite consensus disorder prediction 472 498 - -
Prci2g3394 498 MobiDBLite consensus disorder prediction 73 91 - -
Prci2g3394 498 MobiDBLite consensus disorder prediction 67 94 - -
Prci2g3394 498 SUPERFAMILY Homeodomain-like 3 69 IPR009057 -
Prci2g3394 498 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 498 - -
Prci2g3394 498 MobiDBLite consensus disorder prediction 388 411 - -
Prci2g3394 498 MobiDBLite consensus disorder prediction 134 164 - -
Prci2g3394 498 MobiDBLite consensus disorder prediction 129 173 - -
Prci2g3394 498 CDD homeodomain 5 60 IPR001356 GO:0003677
Prci2g3394 498 SMART HOX_1 3 65 IPR001356 GO:0003677
Prci2g3394 498 Gene3D - 1 77 - -
Prci2g3394 498 Pfam Homeodomain 5 60 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3394 Prci-Chr2 43358135 43365509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3394 2 498 Homeobox Transcription Factor Family AT4G03250 40.335 5.16e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Prci2g3394 Homeodomain 8.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3394 - - gmx:100803515 653.284