Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3392 ATGACAGTCATGGAAGAATCAGGTGAATTGCAATCAGAAGAGAATAAAGTTTCTATGGAGAAAAATAAGAAAAGAAGGCTTAAAACACCTGCCCAGGTGATGGCCCTGGAAAAATTTTATGATGAGCACAAATATCCCACAGAAGAAATGAAATCAGAACTTGCTGAGGAGTTAGGCTTGACTGAAAAGCAAGTATCTGGATGGTTTTGCCACAGACGGTTAAAAGATAAAAGATTGTTGAAGGATGAAGCATGTGCTAATGGACGGCAAGATCGTTCAAGTGGTGTCATCCAGGACCATGTAAGTGGACTAGGGCAAGATTCATGTGGAAGCACTAAACATGGTGATTATAAGCATCTTGATCTGAAAGAGGTTGAGAGTCATGGCCTCTACAGCAATGACTTTTCTGTTGCAGATATGACTTATGGACGTAATAGACACTATAATGAAGATGTTGGTGGAACTGATAACACATCTTCTGAGAGTAGCTCGTCTTTAAGAGATCAGATGTTCTCTCAAGGGCAGGATCCATATAACATGGAGCCTTCTAGACATCTGACACCTAACAGAGCTCTGCCACCTTTAGTTCCCAAAGCTGCAATTAACATTGGATATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCTGTCAAGAAGCGATTAGGAAGACACTATCAGGAAGATGGTCCACTGCTTAGTGTAGAATTTGATCCAGTTCCTCCAGGGGCATTTGAGTGCCAAATTGCAGATCCAGTTGATGAATCATTCCATACTGCGAATCCTTCTCTTGCCAGTCCTACAGAAATTCCTGCTGGGAAAAGGCAACCTGCCCTTAACTCTATGTATGACTCCAAATATAGTTCCCAAGATTTACATATGGAAGTAGGAGATCTTGGCTCCTTGCATGACGCTGATTTGCTGGATAAGAAACCCCGTCGACACAAGCAAGGGCGGACATTTCAGGGTCATACCAATCATATACCTCATAGGAACTCCTCCCTGGAGTTGTATGAAGATTCTACTAGAGAAGTACCTGCTTATAATACAATGAGGTCTAAACATGGTGTAGGGATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTTTGAAGGGGACCTTGTGGTTAAGCAGGCAGATTCACTTCTGCATCGCTATGATAATGTCAATCCAAAGAAAATTCAGAGAAGTGAATATGTAAAATCTAAGCCTTCAAATTCATTAAGAAATTCTCGCGTTTCTCTTGATACTGAAGAAAGAGGACTATCTTCAAAGATAGCAAAGGAAGAGAAGTTTATTGGAGACAAGAAAGCGAGAAAACAATATCATGATTCAGAGAGAATGAGGATGCTTCCAAATGAAACCACGATTGCAAAAAGAGTTAAAGATGATCTTCCTCAACAACAGAATCTGAAACATGCACTAGTAGCTGAGATGCAACCTCAGAAAAATCGGAGTTTGTTTATCAAGATTGTTTGGTAG 1506 0.4044 MTVMEESGELQSEENKVSMEKNKKRRLKTPAQVMALEKFYDEHKYPTEEMKSELAEELGLTEKQVSGWFCHRRLKDKRLLKDEACANGRQDRSSGVIQDHVSGLGQDSCGSTKHGDYKHLDLKEVESHGLYSNDFSVADMTYGRNRHYNEDVGGTDNTSSESSSSLRDQMFSQGQDPYNMEPSRHLTPNRALPPLVPKAAINIGYKPSGYLKVKGEIENAAITAVKKRLGRHYQEDGPLLSVEFDPVPPGAFECQIADPVDESFHTANPSLASPTEIPAGKRQPALNSMYDSKYSSQDLHMEVGDLGSLHDADLLDKKPRRHKQGRTFQGHTNHIPHRNSSLELYEDSTREVPAYNTMRSKHGVGMRSDSASNHSDHFEGDLVVKQADSLLHRYDNVNPKKIQRSEYVKSKPSNSLRNSRVSLDTEERGLSSKIAKEEKFIGDKKARKQYHDSERMRMLPNETTIAKRVKDDLPQQQNLKHALVAEMQPQKNRSLFIKIVW 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3392 501 MobiDBLite consensus disorder prediction 152 182 - -
Prci2g3392 501 MobiDBLite consensus disorder prediction 406 429 - -
Prci2g3392 501 MobiDBLite consensus disorder prediction 147 191 - -
Prci2g3392 501 MobiDBLite consensus disorder prediction 9 28 - -
Prci2g3392 501 CDD homeodomain 23 78 IPR001356 GO:0003677
Prci2g3392 501 Pfam Homeodomain 23 78 IPR001356 GO:0003677
Prci2g3392 501 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 493 - -
Prci2g3392 501 SMART HOX_1 21 83 IPR001356 GO:0003677
Prci2g3392 501 MobiDBLite consensus disorder prediction 86 112 - -
Prci2g3392 501 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Prci2g3392 501 Gene3D - 11 95 - -
Prci2g3392 501 SUPERFAMILY Homeodomain-like 21 87 IPR009057 -
Prci2g3392 501 MobiDBLite consensus disorder prediction 91 109 - -
Prci2g3392 501 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3392 Prci-Chr2 43358130 43365509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3392 6 494 Homeobox Transcription Factor Family AT4G03250 39.509 1.17e-79 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Prci2g3392 Homeodomain 8.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3392 - - gmx:100803515 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g3392 2 43358130 43365509 Prci2g3392 2 43358130 43365509 ECH