Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3380 ATGTGGTCCGGAGGGTCCAGGTCGGTCAACTTTGGCCATTCCGAGATGGGCATGGTGGGCCTTCGGGATGTCTTCGTGGTGGCGCCTGCTTCCTCGTACCATAACGATGTCGTCATGCCCGATCCTCACATCCACGGCGTTGGTGTTATTCCGCTTCTCACGGCGGCTCCTTGTCTCGATGGTGACACTGGCAACATGCTCAATCTCAGCACTCATAATCGAAGCCGTAGCGGCGGAATTCAGCTGTGGCAGGATCATTACTTGAAGAAGCAAGGCCTTCCCGAACACAACGGTACCACTAGCTCCGGCAATCTAGCTCACAGCGGCGGCGGGCCGCTAAGCGGCTCGGCTTTGAGCTCAGGAGGCACAACATGCCAAGACTGTGGCAACCAGGCGAAGAAAGATTGCAGTCATAGAAGGTGCAGAACGTGCTGTAAGAGCCGAGGTTATGATTGCCCTACTCACGTTAAGAGCACGTGGGTACCCGCCGCTCGTCGGAGGGAACGCCAACTTATGGCCTCCGCCGCCGGCGCCGGTGGCGGTGGGTCTAGTGGGGCCACATCAATATCCAAGAAACCTAAACTTGTCGCCTCGCAAACCACTACCACTTCGCGTACTTCAACTTCCAACACTACTCGTAGCTTCGACACTAGCTCTAGCCATCAAGATGCGAGTTTCAAAGACTCATTGCCGGGTCAAGTACGTGCGCCGGCCGTGTTCAAGTGCGTTCGTGTCACGGCTGTGGACGACGGCGGGGACGATGAGTATGCTTATCAGGCTGTTGTGAAGATTGGTGGCCATGTGTTCAAAGGGTTTCTGTATGATCAAGGGGTTGAAAATGGAGAAGGTTATCCTAATATCTCGGAGCTGCATTTGGGGGGCGGCGGCGGCGGAGGAACCGGCGCAAGCGGCGGGAGAAATGGAGCCACATCGTCATCCACAATGCTGGATCCTTCTGATGTATACGCAGCTGCTTCATGTGGGGGTTTCCTTGCTGGTTCAACCTATGGTAATGCAATGAATTGA 1026 0.5546 MWSGGSRSVNFGHSEMGMVGLRDVFVVAPASSYHNDVVMPDPHIHGVGVIPLLTAAPCLDGDTGNMLNLSTHNRSRSGGIQLWQDHYLKKQGLPEHNGTTSSGNLAHSGGGPLSGSALSSGGTTCQDCGNQAKKDCSHRRCRTCCKSRGYDCPTHVKSTWVPAARRRERQLMASAAGAGGGGSSGATSISKKPKLVASQTTTTSRTSTSNTTRSFDTSSSHQDASFKDSLPGQVRAPAVFKCVRVTAVDDGGDDEYAYQAVVKIGGHVFKGFLYDQGVENGEGYPNISELHLGGGGGGGTGASGGRNGATSSSTMLDPSDVYAAASCGGFLAGSTYGNAMN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3380 341 MobiDBLite consensus disorder prediction 92 116 - -
Prci2g3380 341 NCBIfam putative zinc finger domain, LRP1 type 124 166 IPR006510 -
Prci2g3380 341 MobiDBLite consensus disorder prediction 289 312 - -
Prci2g3380 341 MobiDBLite consensus disorder prediction 173 229 - -
Prci2g3380 341 Pfam Domain of unknown function (DUF702) 122 279 - -
Prci2g3380 341 MobiDBLite consensus disorder prediction 94 116 - -
Prci2g3380 341 NCBIfam LRP1 C-terminal domain 230 278 IPR006511 -
Prci2g3380 341 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 70 324 IPR007818 GO:0003700|GO:0006355
Prci2g3380 341 MobiDBLite consensus disorder prediction 181 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3380 Prci-Chr2 43237821 43240339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3380 2 321 C2H2 Transcription Factor Family AT5G12330 50.877 1.13e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Prci2g3380 DUF702 4.3e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3380 - - vri:117916582 396.356