Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g3360 ATGGCATTCACAGCAGAGAGGTGCGGCGATGAGACAGAGAAGATGACGATGGTGTTCAGTGTGGTGCAGGAGGAGAGGTCGGCGGTGCCGGCACCGTTCCTGACGAAGACATATCAGCTGGTGGACGACCCTCTCACCGACCACATTGTGTCTTGGGGCTCCGATGAGTCCAGTTTCGTGGTTTGGAGACCCCCCGAGTTTGCCAGAGACCTCCTTCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAATACCTACGGCTTCAAGAAGGTAGTAGCAGATAGGTGGGAATTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCATCTTCTTTGTGAAATCCACAGAAGAAAAAGCCCTCACCACCACCACCATTACCAACATCTCCATGATCAGCCGCCGCCGCCGCAAGATCATCAAGGTCTCTATTGGAACACAGAAATCTCTCCAACATTAATCCCACCTTCTCCCACCAAACCTGCAACAAGAATATCAGGATCCTCAGGAGCCACTCATGAAGTTCTAAGAGCACTTTCAGAAGACAACCAGAGACTGAGAAGGAAGAACTTGATGCTTCTATCAGAACTCACTCACATGAAGAGTCTCTACAATGATATCATCTATTTCATCCAGAACCATGTCAAACCAGTTGATAATAACAATGATCTTCCCTTTGAGAAAATAATTAGAGGCAGATCAATATGCAGAAGTAGTGATAATGATCATCACAATAATCCCAAGCTGGTTGAATTGGATTCGTCTGTGTCACTTGATCAGCCTCAAACTGACTATTATGCTAAGATTATGGATAATTCATCATCAGGTGGTTCTGTGAAGCTATTTGGGGTTCCACTTATAAGTAGCAGAAAGAGGTTGCATGAGGAAAATATGGATGAAGAAGAATTTGTTGAGTGTGTTAATTAA 939 0.4505 MAFTAERCGDETEKMTMVFSVVQEERSAVPAPFLTKTYQLVDDPLTDHIVSWGSDESSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKSPHHHHHYQHLHDQPPPPQDHQGLYWNTEISPTLIPPSPTKPATRISGSSGATHEVLRALSEDNQRLRRKNLMLLSELTHMKSLYNDIIYFIQNHVKPVDNNNDLPFEKIIRGRSICRSSDNDHHNNPKLVELDSSVSLDQPQTDYYAKIMDNSSSGGSVKLFGVPLISSRKRLHEENMDEEEFVECVN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g3360 312 FunFam Heat stress transcription factor B-4 25 123 - -
Prci2g3360 312 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g3360 312 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g3360 312 Coils Coil 180 200 - -
Prci2g3360 312 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g3360 312 SUPERFAMILY "Winged helix" DNA-binding domain 30 122 IPR036390 -
Prci2g3360 312 Gene3D - 25 123 IPR036388 -
Prci2g3360 312 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g3360 312 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g3360 312 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci2g3360 312 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 238 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g3360 Prci-Chr2 42952125 42954078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g3360 21 298 HSF AT1G46264 50.000 2.57e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci2g3360 HSF_DNA-bind 4.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g3360 K09419 - gmx:100776060 311.612